Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4912

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4911 and GFF4912 are separated by 38 nucleotidesGFF4912 and GFF4913 are separated by 10 nucleotides GFF4911 - Pyruvate oxidase [ubiquinone, cytochrome] (EC 1.2.2.2), at 13,251 to 14,969 GFF4911 GFF4912 - Low-specificity L-threonine aldolase (EC 4.1.2.5), at 15,008 to 16,009 GFF4912 GFF4913 - FIG00638862: hypothetical protein, at 16,020 to 17,453 GFF4913 Position (kb) 15 16 17Strain fitness (log2 ratio) -2 -1 0 1 2at 14.186 kb on + strand, within GFF4911at 14.627 kb on + strand, within GFF4911at 15.029 kb on - strandat 15.094 kb on - strandat 15.094 kb on - strandat 15.235 kb on + strand, within GFF4912at 15.256 kb on + strand, within GFF4912at 15.260 kb on + strand, within GFF4912at 15.260 kb on + strand, within GFF4912at 15.261 kb on - strand, within GFF4912at 15.261 kb on - strand, within GFF4912at 15.449 kb on + strand, within GFF4912at 15.450 kb on - strand, within GFF4912at 15.473 kb on - strand, within GFF4912at 15.473 kb on - strand, within GFF4912at 15.549 kb on + strand, within GFF4912at 15.550 kb on - strand, within GFF4912at 15.567 kb on - strand, within GFF4912at 15.671 kb on - strand, within GFF4912at 15.725 kb on + strand, within GFF4912at 15.726 kb on - strand, within GFF4912at 16.233 kb on + strand, within GFF4913at 16.233 kb on + strand, within GFF4913at 16.338 kb on - strand, within GFF4913at 16.509 kb on + strand, within GFF4913at 16.509 kb on + strand, within GFF4913at 16.510 kb on - strand, within GFF4913at 16.585 kb on - strand, within GFF4913at 16.769 kb on + strand, within GFF4913

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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14,186 + GFF4911 0.54 -0.0
14,627 + GFF4911 0.80 -1.0
15,029 - +0.2
15,094 - +0.6
15,094 - -1.2
15,235 + GFF4912 0.23 -0.6
15,256 + GFF4912 0.25 +1.4
15,260 + GFF4912 0.25 -0.7
15,260 + GFF4912 0.25 -1.0
15,261 - GFF4912 0.25 -0.2
15,261 - GFF4912 0.25 -0.5
15,449 + GFF4912 0.44 -0.2
15,450 - GFF4912 0.44 +0.1
15,473 - GFF4912 0.46 +0.5
15,473 - GFF4912 0.46 +0.5
15,549 + GFF4912 0.54 -0.0
15,550 - GFF4912 0.54 -0.1
15,567 - GFF4912 0.56 -0.7
15,671 - GFF4912 0.66 -2.0
15,725 + GFF4912 0.72 -1.4
15,726 - GFF4912 0.72 -1.0
16,233 + GFF4913 0.15 -1.4
16,233 + GFF4913 0.15 +0.2
16,338 - GFF4913 0.22 -0.8
16,509 + GFF4913 0.34 +2.0
16,509 + GFF4913 0.34 -0.7
16,510 - GFF4913 0.34 -0.2
16,585 - GFF4913 0.39 +0.3
16,769 + GFF4913 0.52 -0.1

Or see this region's nucleotide sequence