Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4809

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4807 and GFF4808 are separated by 91 nucleotidesGFF4808 and GFF4809 overlap by 1 nucleotidesGFF4809 and GFF4810 overlap by 4 nucleotidesGFF4810 and GFF4811 overlap by 19 nucleotides GFF4807 - CRISPR associated protein of unknown function, at 107,462 to 108,118 GFF4807 GFF4808 - CRISPR-associated protein, Cas2, at 108,210 to 108,503 GFF4808 GFF4809 - CRISPR-associated protein Cas1, at 108,503 to 109,423 GFF4809 GFF4810 - CRISPR-associated protein, Cse3 family, at 109,420 to 110,070 GFF4810 GFF4811 - CRISPR-associated protein, Cas5e family, at 110,052 to 110,798 GFF4811 Position (kb) 108 109 110Strain fitness (log2 ratio) -2 -1 0 1at 108.066 kb on + strandat 108.127 kb on - strandat 108.127 kb on - strandat 108.269 kb on + strand, within GFF4808at 108.269 kb on + strand, within GFF4808at 108.314 kb on + strand, within GFF4808at 108.413 kb on - strand, within GFF4808at 108.471 kb on + strand, within GFF4808at 108.498 kb on - strandat 108.498 kb on - strandat 108.806 kb on - strand, within GFF4809at 108.886 kb on + strand, within GFF4809at 108.886 kb on + strand, within GFF4809at 108.886 kb on + strand, within GFF4809at 108.887 kb on - strand, within GFF4809at 108.887 kb on - strand, within GFF4809at 108.930 kb on + strand, within GFF4809at 108.930 kb on + strand, within GFF4809at 108.931 kb on - strand, within GFF4809at 108.934 kb on + strand, within GFF4809at 108.978 kb on + strand, within GFF4809at 109.006 kb on + strand, within GFF4809at 109.271 kb on - strand, within GFF4809at 109.271 kb on - strand, within GFF4809at 109.295 kb on - strand, within GFF4809at 109.359 kb on + strandat 109.383 kb on - strandat 109.477 kb on - strandat 109.541 kb on + strand, within GFF4810at 109.723 kb on - strand, within GFF4810at 110.269 kb on + strand, within GFF4811at 110.270 kb on - strand, within GFF4811at 110.356 kb on + strand, within GFF4811at 110.379 kb on + strand, within GFF4811at 110.380 kb on - strand, within GFF4811

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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108,066 + +0.3
108,127 - -0.4
108,127 - -0.1
108,269 + GFF4808 0.20 -0.1
108,269 + GFF4808 0.20 +1.3
108,314 + GFF4808 0.35 +0.2
108,413 - GFF4808 0.69 -0.8
108,471 + GFF4808 0.89 -0.1
108,498 - +0.7
108,498 - +0.1
108,806 - GFF4809 0.33 -0.8
108,886 + GFF4809 0.42 +0.1
108,886 + GFF4809 0.42 -0.2
108,886 + GFF4809 0.42 -0.1
108,887 - GFF4809 0.42 -1.1
108,887 - GFF4809 0.42 -2.3
108,930 + GFF4809 0.46 +1.5
108,930 + GFF4809 0.46 +1.0
108,931 - GFF4809 0.46 +0.3
108,934 + GFF4809 0.47 +0.6
108,978 + GFF4809 0.52 -1.9
109,006 + GFF4809 0.55 -0.3
109,271 - GFF4809 0.83 -0.5
109,271 - GFF4809 0.83 -0.6
109,295 - GFF4809 0.86 +1.2
109,359 + +0.0
109,383 - +0.8
109,477 - +0.1
109,541 + GFF4810 0.19 +1.0
109,723 - GFF4810 0.47 -0.2
110,269 + GFF4811 0.29 +0.1
110,270 - GFF4811 0.29 +0.2
110,356 + GFF4811 0.41 +0.5
110,379 + GFF4811 0.44 -0.7
110,380 - GFF4811 0.44 -0.8

Or see this region's nucleotide sequence