Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4675

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4674 and GFF4675 are separated by 90 nucleotidesGFF4675 and GFF4676 overlap by 8 nucleotidesGFF4676 and GFF4677 overlap by 20 nucleotidesGFF4677 and GFF4678 overlap by 4 nucleotides GFF4674 - Prophage Clp protease-like protein, at 5,007 to 7,061 GFF4674 GFF4675 - putative RecA/RadA recombinase, at 7,152 to 7,475 GFF4675 GFF4676 - ATP-binding sugar transporter-like protein, at 7,468 to 7,767 GFF4676 GFF4677 - Phage tail completion protein, at 7,748 to 8,314 GFF4677 GFF4678 - Phage minor tail protein, at 8,311 to 8,712 GFF4678 Position (kb) 7 8Strain fitness (log2 ratio) -2 -1 0 1 2at 6.186 kb on - strand, within GFF4674at 6.384 kb on + strand, within GFF4674at 6.384 kb on + strand, within GFF4674at 6.476 kb on + strand, within GFF4674at 6.483 kb on - strand, within GFF4674at 6.483 kb on - strand, within GFF4674at 6.674 kb on - strand, within GFF4674at 6.771 kb on - strand, within GFF4674at 6.891 kb on - strandat 6.951 kb on + strandat 6.953 kb on + strandat 7.058 kb on - strandat 7.058 kb on - strandat 7.210 kb on + strand, within GFF4675at 7.266 kb on - strand, within GFF4675at 7.307 kb on - strand, within GFF4675at 7.408 kb on - strand, within GFF4675at 7.408 kb on - strand, within GFF4675at 7.562 kb on + strand, within GFF4676at 7.622 kb on + strand, within GFF4676at 7.623 kb on - strand, within GFF4676at 7.689 kb on + strand, within GFF4676at 7.755 kb on + strandat 7.756 kb on - strandat 7.805 kb on + strand, within GFF4677at 7.991 kb on + strand, within GFF4677at 7.992 kb on - strand, within GFF4677at 7.992 kb on - strand, within GFF4677at 8.068 kb on + strand, within GFF4677at 8.069 kb on - strand, within GFF4677at 8.069 kb on - strand, within GFF4677at 8.076 kb on + strand, within GFF4677at 8.082 kb on + strand, within GFF4677at 8.176 kb on + strand, within GFF4677at 8.441 kb on - strand, within GFF4678at 8.458 kb on + strand, within GFF4678

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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6,186 - GFF4674 0.57 -0.0
6,384 + GFF4674 0.67 +0.9
6,384 + GFF4674 0.67 +0.1
6,476 + GFF4674 0.71 -0.3
6,483 - GFF4674 0.72 +1.5
6,483 - GFF4674 0.72 +1.4
6,674 - GFF4674 0.81 +0.0
6,771 - GFF4674 0.86 +0.2
6,891 - -0.9
6,951 + -0.9
6,953 + -1.0
7,058 - +0.3
7,058 - -0.3
7,210 + GFF4675 0.18 -0.0
7,266 - GFF4675 0.35 -1.0
7,307 - GFF4675 0.48 -2.6
7,408 - GFF4675 0.79 +0.7
7,408 - GFF4675 0.79 -0.7
7,562 + GFF4676 0.31 +0.3
7,622 + GFF4676 0.51 +0.2
7,623 - GFF4676 0.52 +1.5
7,689 + GFF4676 0.74 +0.4
7,755 + +0.3
7,756 - +0.5
7,805 + GFF4677 0.10 -0.3
7,991 + GFF4677 0.43 +2.4
7,992 - GFF4677 0.43 +0.3
7,992 - GFF4677 0.43 -0.5
8,068 + GFF4677 0.56 -0.1
8,069 - GFF4677 0.57 +0.5
8,069 - GFF4677 0.57 +0.1
8,076 + GFF4677 0.58 +0.3
8,082 + GFF4677 0.59 +1.7
8,176 + GFF4677 0.75 +0.8
8,441 - GFF4678 0.32 -0.2
8,458 + GFF4678 0.37 +0.0

Or see this region's nucleotide sequence