Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4619

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4618 and GFF4619 are separated by 323 nucleotidesGFF4619 and GFF4620 are separated by 59 nucleotides GFF4618 - Lactam utilization protein LamB, at 410,923 to 411,657 GFF4618 GFF4619 - hypothetical protein, at 411,981 to 412,112 GFF4619 GFF4620 - Probable DNA recombinase, at 412,172 to 412,738 GFF4620 Position (kb) 411 412 413Strain fitness (log2 ratio) -2 -1 0 1at 411.158 kb on - strand, within GFF4618at 411.250 kb on + strand, within GFF4618at 411.251 kb on - strand, within GFF4618at 411.310 kb on + strand, within GFF4618at 411.311 kb on - strand, within GFF4618at 411.429 kb on + strand, within GFF4618at 411.506 kb on + strand, within GFF4618at 411.506 kb on + strand, within GFF4618at 411.506 kb on + strand, within GFF4618at 411.507 kb on - strand, within GFF4618at 411.507 kb on - strand, within GFF4618at 411.681 kb on + strandat 411.821 kb on - strandat 411.859 kb on + strandat 412.063 kb on - strand, within GFF4619at 412.088 kb on + strand, within GFF4619at 412.350 kb on - strand, within GFF4620at 412.350 kb on - strand, within GFF4620at 412.406 kb on + strand, within GFF4620at 412.406 kb on + strand, within GFF4620at 412.409 kb on - strand, within GFF4620at 412.443 kb on - strand, within GFF4620at 412.577 kb on - strand, within GFF4620at 412.577 kb on - strand, within GFF4620at 412.625 kb on - strand, within GFF4620at 412.635 kb on + strand, within GFF4620at 412.636 kb on - strand, within GFF4620at 412.636 kb on - strand, within GFF4620at 412.643 kb on + strand, within GFF4620at 412.690 kb on + strandat 412.743 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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411,158 - GFF4618 0.32 -0.0
411,250 + GFF4618 0.44 +0.2
411,251 - GFF4618 0.45 -1.9
411,310 + GFF4618 0.53 +0.8
411,311 - GFF4618 0.53 +0.5
411,429 + GFF4618 0.69 +0.1
411,506 + GFF4618 0.79 -0.7
411,506 + GFF4618 0.79 +1.0
411,506 + GFF4618 0.79 +0.2
411,507 - GFF4618 0.79 -0.9
411,507 - GFF4618 0.79 +0.6
411,681 + +0.1
411,821 - +1.3
411,859 + +0.2
412,063 - GFF4619 0.62 -1.0
412,088 + GFF4619 0.81 +1.1
412,350 - GFF4620 0.31 -0.7
412,350 - GFF4620 0.31 -0.0
412,406 + GFF4620 0.41 +0.1
412,406 + GFF4620 0.41 +0.8
412,409 - GFF4620 0.42 +0.1
412,443 - GFF4620 0.48 -0.3
412,577 - GFF4620 0.71 +1.3
412,577 - GFF4620 0.71 -0.5
412,625 - GFF4620 0.80 -0.0
412,635 + GFF4620 0.82 +0.3
412,636 - GFF4620 0.82 +0.2
412,636 - GFF4620 0.82 -0.1
412,643 + GFF4620 0.83 +0.2
412,690 + +0.9
412,743 - +0.6

Or see this region's nucleotide sequence