Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4598

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4596 and GFF4597 are separated by 281 nucleotidesGFF4597 and GFF4598 are separated by 51 nucleotidesGFF4598 and GFF4599 are separated by 133 nucleotides GFF4596 - Ferric uptake regulation protein FUR, at 386,938 to 387,390 GFF4596 GFF4597 - Flavodoxin 1, at 387,672 to 388,301 GFF4597 GFF4598 - Uncharacterized protein ybfE, at 388,353 to 388,646 GFF4598 GFF4599 - Esterase ybfF (EC 3.1.-.-), at 388,780 to 389,550 GFF4599 Position (kb) 388 389Strain fitness (log2 ratio) -3 -2 -1 0 1at 387.368 kb on - strandat 387.470 kb on - strandat 387.561 kb on + strandat 387.577 kb on - strandat 387.608 kb on - strandat 387.650 kb on + strandat 388.382 kb on + strandat 388.395 kb on + strand, within GFF4598at 388.545 kb on + strand, within GFF4598at 388.545 kb on + strand, within GFF4598at 388.614 kb on + strand, within GFF4598at 388.623 kb on - strandat 388.711 kb on + strandat 388.712 kb on - strandat 388.712 kb on - strandat 388.844 kb on - strandat 388.901 kb on - strand, within GFF4599at 388.929 kb on - strand, within GFF4599at 388.998 kb on + strand, within GFF4599at 389.017 kb on + strand, within GFF4599at 389.018 kb on - strand, within GFF4599at 389.021 kb on - strand, within GFF4599at 389.106 kb on + strand, within GFF4599at 389.195 kb on + strand, within GFF4599at 389.386 kb on + strand, within GFF4599at 389.505 kb on + strandat 389.589 kb on + strandat 389.590 kb on - strandat 389.623 kb on + strandat 389.630 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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387,368 - +0.6
387,470 - +0.6
387,561 + +1.5
387,577 - +0.5
387,608 - -1.0
387,650 + -0.1
388,382 + -0.4
388,395 + GFF4598 0.14 -0.7
388,545 + GFF4598 0.65 -0.6
388,545 + GFF4598 0.65 -0.4
388,614 + GFF4598 0.89 -1.4
388,623 - +0.0
388,711 + +0.4
388,712 - -3.5
388,712 - -0.4
388,844 - +0.5
388,901 - GFF4599 0.16 +0.6
388,929 - GFF4599 0.19 +0.1
388,998 + GFF4599 0.28 -2.4
389,017 + GFF4599 0.31 -0.4
389,018 - GFF4599 0.31 -0.7
389,021 - GFF4599 0.31 -0.1
389,106 + GFF4599 0.42 -0.4
389,195 + GFF4599 0.54 +0.2
389,386 + GFF4599 0.79 +0.2
389,505 + +0.0
389,589 + +0.2
389,590 - +0.0
389,623 + -0.6
389,630 + +0.0

Or see this region's nucleotide sequence