Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4460

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4459 and GFF4460 are separated by 386 nucleotidesGFF4460 and GFF4461 overlap by 8 nucleotidesGFF4461 and GFF4462 overlap by 4 nucleotides GFF4459 - Mobile element protein, at 244,413 to 244,631 GFF4459 GFF4460 - Putative inner membrane protein, at 245,018 to 246,658 GFF4460 GFF4461 - Polymyxin resistance protein ArnC, glycosyl transferase (EC 2.4.-.-), at 246,651 to 247,577 GFF4461 GFF4462 - Bactoprenol-linked glucose translocase, at 247,574 to 247,849 GFF4462 Position (kb) 245 246 247Strain fitness (log2 ratio) -1 0 1at 244.044 kb on - strandat 244.106 kb on - strandat 244.106 kb on - strandat 244.291 kb on + strandat 244.330 kb on + strandat 244.385 kb on + strandat 244.387 kb on + strandat 244.530 kb on - strand, within GFF4459at 244.530 kb on - strand, within GFF4459at 244.533 kb on - strand, within GFF4459at 244.587 kb on + strand, within GFF4459at 244.646 kb on - strandat 244.869 kb on + strandat 244.870 kb on - strandat 244.951 kb on - strandat 244.956 kb on - strandat 245.845 kb on + strand, within GFF4460at 246.349 kb on - strand, within GFF4460at 246.560 kb on - strandat 247.184 kb on + strand, within GFF4461at 247.184 kb on + strand, within GFF4461at 247.184 kb on + strand, within GFF4461at 247.294 kb on - strand, within GFF4461

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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244,044 - +1.0
244,106 - +0.3
244,106 - -0.2
244,291 + -0.6
244,330 + +0.3
244,385 + -0.1
244,387 + -0.4
244,530 - GFF4459 0.53 -0.5
244,530 - GFF4459 0.53 +0.3
244,533 - GFF4459 0.55 -1.7
244,587 + GFF4459 0.79 -0.3
244,646 - +1.4
244,869 + +0.8
244,870 - +0.1
244,951 - -0.7
244,956 - -0.3
245,845 + GFF4460 0.50 -0.2
246,349 - GFF4460 0.81 -0.8
246,560 - -0.9
247,184 + GFF4461 0.57 +0.6
247,184 + GFF4461 0.57 -0.9
247,184 + GFF4461 0.57 +0.2
247,294 - GFF4461 0.69 -0.5

Or see this region's nucleotide sequence