Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4433

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4432 and GFF4433 are separated by 21 nucleotidesGFF4433 and GFF4434 are separated by 330 nucleotides GFF4432 - Allantoate amidohydrolase (EC 3.5.3.9), at 218,937 to 220,172 GFF4432 GFF4433 - Ureidoglycolate dehydrogenase (EC 1.1.1.154), at 220,194 to 221,243 GFF4433 GFF4434 - Protein fdrA, at 221,574 to 223,238 GFF4434 Position (kb) 220 221 222Strain fitness (log2 ratio) -2 -1 0 1 2at 219.323 kb on + strand, within GFF4432at 219.345 kb on + strand, within GFF4432at 219.345 kb on + strand, within GFF4432at 219.346 kb on - strand, within GFF4432at 219.346 kb on - strand, within GFF4432at 219.390 kb on + strand, within GFF4432at 219.440 kb on + strand, within GFF4432at 219.662 kb on + strand, within GFF4432at 219.663 kb on - strand, within GFF4432at 219.724 kb on - strand, within GFF4432at 219.986 kb on - strand, within GFF4432at 220.410 kb on + strand, within GFF4433at 220.411 kb on - strand, within GFF4433at 220.593 kb on + strand, within GFF4433at 220.731 kb on - strand, within GFF4433at 220.775 kb on + strand, within GFF4433at 221.090 kb on - strand, within GFF4433at 221.140 kb on + strandat 222.189 kb on - strand, within GFF4434at 222.234 kb on - strand, within GFF4434

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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219,323 + GFF4432 0.31 -0.4
219,345 + GFF4432 0.33 -1.6
219,345 + GFF4432 0.33 -0.0
219,346 - GFF4432 0.33 -0.4
219,346 - GFF4432 0.33 +0.1
219,390 + GFF4432 0.37 +1.5
219,440 + GFF4432 0.41 +0.7
219,662 + GFF4432 0.59 +0.2
219,663 - GFF4432 0.59 +0.3
219,724 - GFF4432 0.64 +0.1
219,986 - GFF4432 0.85 +0.1
220,410 + GFF4433 0.21 +1.9
220,411 - GFF4433 0.21 +0.9
220,593 + GFF4433 0.38 -1.9
220,731 - GFF4433 0.51 -0.1
220,775 + GFF4433 0.55 +0.5
221,090 - GFF4433 0.85 +0.1
221,140 + +1.2
222,189 - GFF4434 0.37 +0.9
222,234 - GFF4434 0.40 -0.1

Or see this region's nucleotide sequence