Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF443

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF442 and GFF443 are separated by 104 nucleotidesGFF443 and GFF444 are separated by 81 nucleotides GFF442 - Xylose activator XylR (AraC family), at 163,748 to 164,926 GFF442 GFF443 - FIG01045230: hypothetical protein, at 165,031 to 165,207 GFF443 GFF444 - Xylose isomerase (EC 5.3.1.5), at 165,289 to 166,611 GFF444 Position (kb) 165 166Strain fitness (log2 ratio) -2 -1 0 1 2at 164.144 kb on + strand, within GFF442at 164.250 kb on + strand, within GFF442at 164.251 kb on - strand, within GFF442at 164.259 kb on - strand, within GFF442at 164.270 kb on - strand, within GFF442at 164.462 kb on + strand, within GFF442at 164.554 kb on - strand, within GFF442at 164.895 kb on - strandat 164.933 kb on - strandat 164.985 kb on + strandat 165.084 kb on - strand, within GFF443at 165.210 kb on + strandat 165.210 kb on + strandat 165.211 kb on - strandat 165.221 kb on + strandat 165.256 kb on + strandat 165.288 kb on + strandat 165.399 kb on + strandat 165.439 kb on - strand, within GFF444at 165.463 kb on - strand, within GFF444at 165.473 kb on + strand, within GFF444at 165.473 kb on + strand, within GFF444at 165.631 kb on + strand, within GFF444at 165.631 kb on + strand, within GFF444at 165.633 kb on + strand, within GFF444at 165.634 kb on - strand, within GFF444at 165.692 kb on + strand, within GFF444at 165.822 kb on + strand, within GFF444at 165.822 kb on + strand, within GFF444at 165.952 kb on - strand, within GFF444at 166.016 kb on - strand, within GFF444at 166.158 kb on + strand, within GFF444

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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164,144 + GFF442 0.34 +0.7
164,250 + GFF442 0.43 -0.8
164,251 - GFF442 0.43 +0.3
164,259 - GFF442 0.43 -0.6
164,270 - GFF442 0.44 -0.7
164,462 + GFF442 0.61 +0.0
164,554 - GFF442 0.68 +0.5
164,895 - +0.0
164,933 - -0.2
164,985 + +0.4
165,084 - GFF443 0.30 -0.5
165,210 + -0.0
165,210 + -1.1
165,211 - -1.3
165,221 + -0.2
165,256 + +0.3
165,288 + +2.4
165,399 + -0.6
165,439 - GFF444 0.11 -0.3
165,463 - GFF444 0.13 -0.7
165,473 + GFF444 0.14 -0.3
165,473 + GFF444 0.14 -0.3
165,631 + GFF444 0.26 -1.8
165,631 + GFF444 0.26 +0.2
165,633 + GFF444 0.26 -0.9
165,634 - GFF444 0.26 -0.2
165,692 + GFF444 0.30 +0.1
165,822 + GFF444 0.40 -1.6
165,822 + GFF444 0.40 +1.2
165,952 - GFF444 0.50 +1.2
166,016 - GFF444 0.55 -0.4
166,158 + GFF444 0.66 -0.1

Or see this region's nucleotide sequence