Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF434

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF433 and GFF434 are separated by 23 nucleotidesGFF434 and GFF435 are separated by 11 nucleotides GFF433 - Putative chemotaxis protein, resembles cheA, at 155,009 to 155,941 GFF433 GFF434 - hypothetical protein, at 155,965 to 156,429 GFF434 GFF435 - 3-dehydro-L-gulonate 2-dehydrogenase (EC 1.1.1.130), at 156,441 to 157,439 GFF435 Position (kb) 155 156 157Strain fitness (log2 ratio) -1 0 1at 155.230 kb on - strand, within GFF433at 155.320 kb on + strand, within GFF433at 155.353 kb on + strand, within GFF433at 155.366 kb on + strand, within GFF433at 155.366 kb on + strand, within GFF433at 155.367 kb on - strand, within GFF433at 155.367 kb on - strand, within GFF433at 155.383 kb on + strand, within GFF433at 155.499 kb on - strand, within GFF433at 155.622 kb on + strand, within GFF433at 155.921 kb on - strandat 155.933 kb on - strandat 156.351 kb on + strand, within GFF434at 156.376 kb on + strand, within GFF434at 156.414 kb on + strandat 156.442 kb on + strandat 156.642 kb on + strand, within GFF435at 156.643 kb on - strand, within GFF435at 156.643 kb on - strand, within GFF435at 156.923 kb on + strand, within GFF435at 156.923 kb on + strand, within GFF435at 156.923 kb on + strand, within GFF435at 156.924 kb on - strand, within GFF435at 156.927 kb on + strand, within GFF435at 156.927 kb on + strand, within GFF435at 157.045 kb on + strand, within GFF435at 157.045 kb on + strand, within GFF435at 157.104 kb on - strand, within GFF435at 157.315 kb on + strand, within GFF435at 157.403 kb on - strandat 157.417 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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155,230 - GFF433 0.24 -1.4
155,320 + GFF433 0.33 +0.3
155,353 + GFF433 0.37 +0.3
155,366 + GFF433 0.38 +0.4
155,366 + GFF433 0.38 +0.4
155,367 - GFF433 0.38 +0.1
155,367 - GFF433 0.38 -0.4
155,383 + GFF433 0.40 +0.4
155,499 - GFF433 0.53 +0.1
155,622 + GFF433 0.66 +0.5
155,921 - +0.6
155,933 - -1.3
156,351 + GFF434 0.83 -0.8
156,376 + GFF434 0.88 +0.1
156,414 + -0.5
156,442 + -1.4
156,642 + GFF435 0.20 +0.0
156,643 - GFF435 0.20 -0.0
156,643 - GFF435 0.20 -0.7
156,923 + GFF435 0.48 -0.1
156,923 + GFF435 0.48 -0.2
156,923 + GFF435 0.48 +1.2
156,924 - GFF435 0.48 +0.1
156,927 + GFF435 0.49 -0.6
156,927 + GFF435 0.49 +0.6
157,045 + GFF435 0.60 +0.9
157,045 + GFF435 0.60 +0.3
157,104 - GFF435 0.66 -1.4
157,315 + GFF435 0.87 -0.4
157,403 - +0.4
157,417 - -0.1

Or see this region's nucleotide sequence