Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3570

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3568 and GFF3569 are separated by 21 nucleotidesGFF3569 and GFF3570 are separated by 58 nucleotidesGFF3570 and GFF3571 are separated by 11 nucleotides GFF3568 - Amino acid transporter, at 323,793 to 325,136 GFF3568 GFF3569 - Proline iminopeptidase (EC 3.4.11.5), at 325,158 to 326,051 GFF3569 GFF3570 - FIG074102: hypothetical protein, at 326,110 to 326,847 GFF3570 GFF3571 - Ribokinase (EC 2.7.1.15), at 326,859 to 328,085 GFF3571 Position (kb) 326 327Strain fitness (log2 ratio) -1 0 1 2at 325.345 kb on - strand, within GFF3569at 325.560 kb on - strand, within GFF3569at 325.689 kb on + strand, within GFF3569at 326.153 kb on + strandat 326.313 kb on - strand, within GFF3570

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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325,345 - GFF3569 0.21 +2.0
325,560 - GFF3569 0.45 -0.1
325,689 + GFF3569 0.59 -1.0
326,153 + +1.6
326,313 - GFF3570 0.28 -1.3

Or see this region's nucleotide sequence