Experiment: LB_plus_SM_buffer with S16_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3392 and GFF3393 are separated by 178 nucleotides GFF3393 and GFF3394 are separated by 74 nucleotides GFF3394 and GFF3395 are separated by 241 nucleotides GFF3395 and GFF3396 are separated by 96 nucleotides
GFF3392 - NADH dehydrogenase (EC 1.6.99.3), at 156,479 to 157,810
GFF3392
GFF3393 - FIG01200701: possible membrane protein, at 157,989 to 158,528
GFF3393
GFF3394 - putative transcriptional repressor, at 158,603 to 159,238
GFF3394
GFF3395 - Putative outer membrane protein, at 159,480 to 159,737
GFF3395
GFF3396 - L,D-transpeptidase YcfS, at 159,834 to 160,799
GFF3396
Position (kb) 158
159
160 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 157.694 kb on + strand at 157.695 kb on - strand at 157.706 kb on + strand at 157.707 kb on - strand at 157.711 kb on + strand at 157.742 kb on - strand at 157.943 kb on + strand at 158.352 kb on + strand, within GFF3393 at 158.352 kb on + strand, within GFF3393 at 158.352 kb on + strand, within GFF3393 at 158.352 kb on + strand, within GFF3393 at 158.352 kb on + strand, within GFF3393 at 158.352 kb on + strand, within GFF3393 at 158.376 kb on - strand, within GFF3393 at 158.386 kb on - strand, within GFF3393 at 158.462 kb on + strand, within GFF3393 at 158.717 kb on + strand, within GFF3394 at 158.720 kb on - strand, within GFF3394 at 158.721 kb on + strand, within GFF3394 at 158.876 kb on - strand, within GFF3394 at 158.885 kb on - strand, within GFF3394 at 158.940 kb on + strand, within GFF3394 at 158.943 kb on - strand, within GFF3394 at 159.018 kb on + strand, within GFF3394 at 159.101 kb on + strand, within GFF3394 at 159.402 kb on + strand at 159.403 kb on - strand at 159.680 kb on + strand, within GFF3395 at 159.729 kb on + strand at 159.729 kb on + strand at 159.732 kb on - strand at 159.735 kb on + strand at 159.736 kb on - strand at 159.736 kb on - strand at 159.836 kb on - strand at 160.002 kb on - strand, within GFF3396 at 160.007 kb on + strand, within GFF3396 at 160.125 kb on + strand, within GFF3396 at 160.126 kb on - strand, within GFF3396 at 160.126 kb on - strand, within GFF3396 at 160.169 kb on + strand, within GFF3396
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI remove 157,694 + -0.8 157,695 - +0.2 157,706 + -1.0 157,707 - +0.4 157,711 + +0.4 157,742 - -0.1 157,943 + -0.2 158,352 + GFF3393 0.67 -0.6 158,352 + GFF3393 0.67 +1.6 158,352 + GFF3393 0.67 +0.7 158,352 + GFF3393 0.67 +0.4 158,352 + GFF3393 0.67 -0.4 158,352 + GFF3393 0.67 -1.2 158,376 - GFF3393 0.72 +0.1 158,386 - GFF3393 0.74 +3.0 158,462 + GFF3393 0.88 +1.1 158,717 + GFF3394 0.18 +0.6 158,720 - GFF3394 0.18 +1.6 158,721 + GFF3394 0.19 +1.0 158,876 - GFF3394 0.43 +2.2 158,885 - GFF3394 0.44 +1.5 158,940 + GFF3394 0.53 +0.4 158,943 - GFF3394 0.53 +2.7 159,018 + GFF3394 0.65 +3.7 159,101 + GFF3394 0.78 +2.4 159,402 + +1.3 159,403 - -0.6 159,680 + GFF3395 0.78 -1.2 159,729 + -0.9 159,729 + -0.7 159,732 - -1.9 159,735 + -0.4 159,736 - -0.6 159,736 - -1.0 159,836 - +0.2 160,002 - GFF3396 0.17 -0.5 160,007 + GFF3396 0.18 +0.1 160,125 + GFF3396 0.30 +0.0 160,126 - GFF3396 0.30 -0.3 160,126 - GFF3396 0.30 +0.6 160,169 + GFF3396 0.35 +1.5
Or see this region's nucleotide sequence