Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3120

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3117 and GFF3118 are separated by 6 nucleotidesGFF3118 and GFF3119 overlap by 8 nucleotidesGFF3119 and GFF3120 are separated by 121 nucleotidesGFF3120 and GFF3121 are separated by 139 nucleotidesGFF3121 and GFF3122 are separated by 63 nucleotides GFF3117 - Biopolymer transport protein ExbD/TolR, at 124,712 to 125,137 GFF3117 GFF3118 - MotA/TolQ/ExbB proton channel family protein, at 125,144 to 125,878 GFF3118 GFF3119 - hypothetical protein, at 125,871 to 126,008 GFF3119 GFF3120 - Cystathionine beta-lyase (EC 4.4.1.8), at 126,130 to 127,317 GFF3120 GFF3121 - DedA family inner membrane protein YghB, at 127,457 to 128,116 GFF3121 GFF3122 - Transcriptional regulator, AraC family, at 128,180 to 129,079 GFF3122 Position (kb) 126 127 128Strain fitness (log2 ratio) -2 -1 0 1 2at 125.175 kb on - strandat 125.232 kb on - strand, within GFF3118at 125.265 kb on + strand, within GFF3118at 125.266 kb on - strand, within GFF3118at 125.359 kb on + strand, within GFF3118at 125.423 kb on - strand, within GFF3118at 125.570 kb on - strand, within GFF3118at 125.570 kb on - strand, within GFF3118at 125.715 kb on - strand, within GFF3118at 125.833 kb on - strandat 125.869 kb on + strandat 125.916 kb on + strand, within GFF3119at 125.917 kb on - strand, within GFF3119at 125.917 kb on - strand, within GFF3119at 125.917 kb on - strand, within GFF3119at 125.920 kb on - strand, within GFF3119at 125.920 kb on - strand, within GFF3119at 125.920 kb on - strand, within GFF3119at 125.960 kb on + strand, within GFF3119at 125.960 kb on + strand, within GFF3119at 125.968 kb on + strand, within GFF3119at 125.982 kb on + strand, within GFF3119at 126.029 kb on - strandat 126.079 kb on + strandat 126.081 kb on + strandat 126.091 kb on - strandat 126.091 kb on - strandat 126.204 kb on + strandat 126.204 kb on + strandat 126.460 kb on + strand, within GFF3120at 126.558 kb on + strand, within GFF3120at 126.581 kb on + strand, within GFF3120at 126.687 kb on + strand, within GFF3120at 126.735 kb on + strand, within GFF3120at 126.735 kb on + strand, within GFF3120at 126.877 kb on + strand, within GFF3120at 126.878 kb on - strand, within GFF3120at 126.878 kb on - strand, within GFF3120at 126.878 kb on - strand, within GFF3120at 126.879 kb on + strand, within GFF3120at 126.880 kb on - strand, within GFF3120at 126.880 kb on - strand, within GFF3120at 126.880 kb on - strand, within GFF3120at 127.009 kb on - strand, within GFF3120at 127.108 kb on + strand, within GFF3120at 127.142 kb on - strand, within GFF3120at 127.176 kb on + strand, within GFF3120at 127.316 kb on - strandat 127.336 kb on + strandat 127.337 kb on - strandat 127.337 kb on - strandat 127.338 kb on + strandat 127.338 kb on + strandat 127.338 kb on + strandat 127.338 kb on + strandat 127.339 kb on - strandat 127.339 kb on - strandat 127.339 kb on - strandat 127.339 kb on - strandat 127.339 kb on - strandat 127.339 kb on - strandat 127.412 kb on - strandat 127.417 kb on - strandat 127.432 kb on + strandat 127.475 kb on - strandat 127.542 kb on - strand, within GFF3121at 127.599 kb on + strand, within GFF3121at 127.600 kb on - strand, within GFF3121at 127.715 kb on + strand, within GFF3121at 127.739 kb on - strand, within GFF3121at 127.741 kb on + strand, within GFF3121at 127.742 kb on - strand, within GFF3121at 127.785 kb on - strand, within GFF3121at 127.827 kb on + strand, within GFF3121at 127.827 kb on + strand, within GFF3121at 128.019 kb on + strand, within GFF3121at 128.020 kb on - strand, within GFF3121at 128.052 kb on + strandat 128.108 kb on - strandat 128.120 kb on - strandat 128.120 kb on - strandat 128.182 kb on - strandat 128.182 kb on - strandat 128.246 kb on - strandat 128.246 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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125,175 - -0.3
125,232 - GFF3118 0.12 -0.2
125,265 + GFF3118 0.16 -1.0
125,266 - GFF3118 0.17 -0.4
125,359 + GFF3118 0.29 -1.3
125,423 - GFF3118 0.38 -0.2
125,570 - GFF3118 0.58 -1.8
125,570 - GFF3118 0.58 -1.1
125,715 - GFF3118 0.78 +0.3
125,833 - -1.1
125,869 + -0.1
125,916 + GFF3119 0.33 +0.3
125,917 - GFF3119 0.33 +0.2
125,917 - GFF3119 0.33 -0.3
125,917 - GFF3119 0.33 -0.3
125,920 - GFF3119 0.36 +0.0
125,920 - GFF3119 0.36 -0.8
125,920 - GFF3119 0.36 -0.8
125,960 + GFF3119 0.64 +0.2
125,960 + GFF3119 0.64 +0.2
125,968 + GFF3119 0.70 -1.0
125,982 + GFF3119 0.80 +0.3
126,029 - +0.5
126,079 + +0.1
126,081 + +0.6
126,091 - +0.3
126,091 - +2.1
126,204 + -0.7
126,204 + +0.6
126,460 + GFF3120 0.28 -0.6
126,558 + GFF3120 0.36 +0.3
126,581 + GFF3120 0.38 -0.0
126,687 + GFF3120 0.47 -0.2
126,735 + GFF3120 0.51 -0.8
126,735 + GFF3120 0.51 +0.1
126,877 + GFF3120 0.63 -0.4
126,878 - GFF3120 0.63 -0.3
126,878 - GFF3120 0.63 -0.0
126,878 - GFF3120 0.63 -0.9
126,879 + GFF3120 0.63 +0.3
126,880 - GFF3120 0.63 -0.3
126,880 - GFF3120 0.63 +1.8
126,880 - GFF3120 0.63 -0.1
127,009 - GFF3120 0.74 +2.0
127,108 + GFF3120 0.82 -0.7
127,142 - GFF3120 0.85 -0.4
127,176 + GFF3120 0.88 +0.3
127,316 - -0.5
127,336 + +2.6
127,337 - -0.4
127,337 - -1.0
127,338 + -0.1
127,338 + +0.3
127,338 + -1.0
127,338 + +0.9
127,339 - +0.6
127,339 - +0.0
127,339 - +0.1
127,339 - +0.4
127,339 - -1.0
127,339 - +0.3
127,412 - +0.1
127,417 - -1.3
127,432 + +1.1
127,475 - +0.0
127,542 - GFF3121 0.13 +0.0
127,599 + GFF3121 0.22 +0.1
127,600 - GFF3121 0.22 +0.7
127,715 + GFF3121 0.39 +0.4
127,739 - GFF3121 0.43 -0.0
127,741 + GFF3121 0.43 +1.7
127,742 - GFF3121 0.43 +0.2
127,785 - GFF3121 0.50 +0.6
127,827 + GFF3121 0.56 -0.1
127,827 + GFF3121 0.56 +2.0
128,019 + GFF3121 0.85 -0.8
128,020 - GFF3121 0.85 -0.6
128,052 + -0.7
128,108 - -2.4
128,120 - -0.1
128,120 - +1.3
128,182 - -0.4
128,182 - -1.8
128,246 - -0.3
128,246 - +0.0

Or see this region's nucleotide sequence