Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2751

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2750 and GFF2751 are separated by 662 nucleotidesGFF2751 and GFF2752 are separated by 131 nucleotides GFF2750 - Thymidine kinase (EC 2.7.1.21), at 271,621 to 272,238 GFF2750 GFF2751 - DNA-binding protein H-NS, at 272,901 to 273,314 GFF2751 GFF2752 - UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9), at 273,446 to 274,354 GFF2752 Position (kb) 272 273 274Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7at 271.915 kb on - strand, within GFF2750at 271.918 kb on + strand, within GFF2750at 271.919 kb on - strand, within GFF2750at 271.996 kb on + strand, within GFF2750at 271.996 kb on + strand, within GFF2750at 272.044 kb on - strand, within GFF2750at 272.131 kb on - strand, within GFF2750at 272.135 kb on - strand, within GFF2750at 272.135 kb on - strand, within GFF2750at 272.225 kb on + strandat 272.226 kb on - strandat 272.289 kb on + strandat 272.482 kb on + strandat 272.638 kb on + strandat 272.816 kb on + strandat 273.538 kb on + strand, within GFF2752at 273.703 kb on - strand, within GFF2752at 274.042 kb on + strand, within GFF2752

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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271,915 - GFF2750 0.48 -0.1
271,918 + GFF2750 0.48 -0.9
271,919 - GFF2750 0.48 -1.4
271,996 + GFF2750 0.61 +0.7
271,996 + GFF2750 0.61 -1.0
272,044 - GFF2750 0.68 +1.3
272,131 - GFF2750 0.83 +0.7
272,135 - GFF2750 0.83 -1.5
272,135 - GFF2750 0.83 +0.2
272,225 + -1.6
272,226 - -0.1
272,289 + -0.3
272,482 + +0.7
272,638 + -0.1
272,816 + -0.4
273,538 + GFF2752 0.10 +3.7
273,703 - GFF2752 0.28 +6.8
274,042 + GFF2752 0.66 +4.9

Or see this region's nucleotide sequence