Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2572

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2570 and GFF2571 overlap by 4 nucleotidesGFF2571 and GFF2572 are separated by 105 nucleotidesGFF2572 and GFF2573 are separated by 35 nucleotides GFF2570 - Respiratory nitrate reductase delta chain (EC 1.7.99.4), at 91,586 to 92,281 GFF2570 GFF2571 - Respiratory nitrate reductase gamma chain (EC 1.7.99.4), at 92,278 to 92,958 GFF2571 GFF2572 - Phenazine biosynthesis protein PhzF, at 93,064 to 93,957 GFF2572 GFF2573 - N-hydroxyarylamine O-acetyltransferase (EC 2.3.1.118), at 93,993 to 94,838 GFF2573 Position (kb) 93 94Strain fitness (log2 ratio) -2 -1 0 1at 92.206 kb on - strand, within GFF2570at 92.288 kb on - strandat 92.288 kb on - strandat 92.322 kb on + strandat 92.377 kb on + strand, within GFF2571at 92.378 kb on - strand, within GFF2571at 92.379 kb on + strand, within GFF2571at 92.449 kb on - strand, within GFF2571at 92.509 kb on + strand, within GFF2571at 92.510 kb on - strand, within GFF2571at 92.510 kb on - strand, within GFF2571at 92.579 kb on + strand, within GFF2571at 92.580 kb on - strand, within GFF2571at 92.580 kb on - strand, within GFF2571at 92.604 kb on - strand, within GFF2571at 92.659 kb on - strand, within GFF2571at 92.661 kb on + strand, within GFF2571at 92.662 kb on - strand, within GFF2571at 92.775 kb on + strand, within GFF2571at 92.776 kb on - strand, within GFF2571at 93.032 kb on + strandat 93.153 kb on - strandat 93.242 kb on + strand, within GFF2572at 93.242 kb on + strand, within GFF2572at 93.248 kb on - strand, within GFF2572at 93.263 kb on + strand, within GFF2572at 93.305 kb on - strand, within GFF2572at 93.320 kb on + strand, within GFF2572at 93.404 kb on - strand, within GFF2572at 93.450 kb on - strand, within GFF2572at 93.450 kb on - strand, within GFF2572at 94.123 kb on - strand, within GFF2573at 94.693 kb on - strand, within GFF2573

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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92,206 - GFF2570 0.89 +0.7
92,288 - +0.7
92,288 - -0.2
92,322 + +0.3
92,377 + GFF2571 0.15 +0.1
92,378 - GFF2571 0.15 +0.2
92,379 + GFF2571 0.15 -0.3
92,449 - GFF2571 0.25 +0.2
92,509 + GFF2571 0.34 +0.9
92,510 - GFF2571 0.34 +0.4
92,510 - GFF2571 0.34 +0.6
92,579 + GFF2571 0.44 +0.6
92,580 - GFF2571 0.44 -0.7
92,580 - GFF2571 0.44 +0.1
92,604 - GFF2571 0.48 +0.3
92,659 - GFF2571 0.56 +0.1
92,661 + GFF2571 0.56 -0.9
92,662 - GFF2571 0.56 -2.0
92,775 + GFF2571 0.73 -0.3
92,776 - GFF2571 0.73 +1.4
93,032 + -0.3
93,153 - -1.4
93,242 + GFF2572 0.20 -0.4
93,242 + GFF2572 0.20 -0.0
93,248 - GFF2572 0.21 +1.0
93,263 + GFF2572 0.22 -0.9
93,305 - GFF2572 0.27 +0.7
93,320 + GFF2572 0.29 -1.7
93,404 - GFF2572 0.38 -0.6
93,450 - GFF2572 0.43 -1.3
93,450 - GFF2572 0.43 -1.3
94,123 - GFF2573 0.15 +0.2
94,693 - GFF2573 0.83 -1.0

Or see this region's nucleotide sequence