Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2517

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2516 and GFF2517 are separated by 140 nucleotidesGFF2517 and GFF2518 are separated by 12 nucleotidesGFF2518 and GFF2519 overlap by 13 nucleotides GFF2516 - Outer membrane protein C precursor, at 32,032 to 33,150 GFF2516 GFF2517 - [NiFe] hydrogenase nickel incorporation HybF-like protein, at 33,291 to 33,632 GFF2517 GFF2518 - Putative dehydrogenase protein, at 33,645 to 34,532 GFF2518 GFF2519 - Hydrogenase maturation factor HoxQ / Hydrogenase maturation factor HoxR, at 34,520 to 35,581 GFF2519 Position (kb) 33 34Strain fitness (log2 ratio) -1 0 1 2at 32.393 kb on - strand, within GFF2516at 32.430 kb on - strand, within GFF2516at 32.608 kb on - strand, within GFF2516at 32.795 kb on - strand, within GFF2516at 33.010 kb on - strand, within GFF2516at 33.045 kb on + strandat 33.175 kb on + strandat 33.181 kb on + strandat 33.404 kb on + strand, within GFF2517at 33.656 kb on + strandat 33.657 kb on - strandat 33.681 kb on + strandat 33.716 kb on + strandat 33.780 kb on - strand, within GFF2518at 33.858 kb on + strand, within GFF2518at 33.966 kb on - strand, within GFF2518at 34.039 kb on - strand, within GFF2518at 34.077 kb on - strand, within GFF2518at 34.088 kb on + strand, within GFF2518at 34.374 kb on + strand, within GFF2518at 34.599 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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32,393 - GFF2516 0.32 +0.2
32,430 - GFF2516 0.36 -0.1
32,608 - GFF2516 0.51 -0.2
32,795 - GFF2516 0.68 -0.1
33,010 - GFF2516 0.87 -0.9
33,045 + -0.3
33,175 + -0.6
33,181 + +0.4
33,404 + GFF2517 0.33 -0.7
33,656 + +0.7
33,657 - -0.2
33,681 + -0.1
33,716 + +1.3
33,780 - GFF2518 0.15 -0.1
33,858 + GFF2518 0.24 +1.9
33,966 - GFF2518 0.36 -0.3
34,039 - GFF2518 0.44 -0.7
34,077 - GFF2518 0.49 -0.1
34,088 + GFF2518 0.50 +0.8
34,374 + GFF2518 0.82 -1.6
34,599 + +0.2

Or see this region's nucleotide sequence