Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1921

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1919 and GFF1920 are separated by 77 nucleotidesGFF1920 and GFF1921 are separated by 88 nucleotidesGFF1921 and GFF1922 are separated by 26 nucleotides GFF1919 - Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1), at 111,901 to 112,683 GFF1919 GFF1920 - hypothetical protein, at 112,761 to 112,883 GFF1920 GFF1921 - 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-), at 112,972 to 113,541 GFF1921 GFF1922 - Lysine-specific permease, at 113,568 to 114,974 GFF1922 Position (kb) 112 113 114Strain fitness (log2 ratio) -2 -1 0 1 2at 112.056 kb on + strand, within GFF1919at 112.179 kb on - strand, within GFF1919at 112.200 kb on - strand, within GFF1919at 112.452 kb on + strand, within GFF1919at 112.497 kb on + strand, within GFF1919at 112.498 kb on - strand, within GFF1919at 112.539 kb on + strand, within GFF1919at 112.577 kb on + strand, within GFF1919at 112.584 kb on + strand, within GFF1919at 112.584 kb on + strand, within GFF1919at 112.584 kb on + strand, within GFF1919at 112.585 kb on - strand, within GFF1919at 112.585 kb on - strand, within GFF1919at 112.841 kb on - strand, within GFF1920at 112.949 kb on + strandat 113.119 kb on + strand, within GFF1921at 113.244 kb on + strand, within GFF1921at 113.245 kb on - strand, within GFF1921at 113.482 kb on + strand, within GFF1921at 113.496 kb on - strandat 113.524 kb on + strandat 113.640 kb on - strandat 113.661 kb on + strandat 113.668 kb on - strandat 113.718 kb on - strand, within GFF1922at 113.878 kb on - strand, within GFF1922at 113.881 kb on + strand, within GFF1922at 113.900 kb on + strand, within GFF1922at 113.948 kb on + strand, within GFF1922at 113.981 kb on + strand, within GFF1922at 114.341 kb on - strand, within GFF1922at 114.493 kb on + strand, within GFF1922

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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112,056 + GFF1919 0.20 -2.0
112,179 - GFF1919 0.36 -0.6
112,200 - GFF1919 0.38 +0.0
112,452 + GFF1919 0.70 -0.3
112,497 + GFF1919 0.76 -0.1
112,498 - GFF1919 0.76 +0.4
112,539 + GFF1919 0.81 -0.3
112,577 + GFF1919 0.86 -0.9
112,584 + GFF1919 0.87 -0.4
112,584 + GFF1919 0.87 -0.5
112,584 + GFF1919 0.87 +0.0
112,585 - GFF1919 0.87 -0.8
112,585 - GFF1919 0.87 -0.6
112,841 - GFF1920 0.65 +0.4
112,949 + +0.6
113,119 + GFF1921 0.26 +0.1
113,244 + GFF1921 0.48 -0.3
113,245 - GFF1921 0.48 -1.4
113,482 + GFF1921 0.89 -1.0
113,496 - -1.0
113,524 + +0.2
113,640 - -0.8
113,661 + +1.6
113,668 - -0.9
113,718 - GFF1922 0.11 +0.4
113,878 - GFF1922 0.22 -0.4
113,881 + GFF1922 0.22 +2.4
113,900 + GFF1922 0.24 +0.8
113,948 + GFF1922 0.27 +1.6
113,981 + GFF1922 0.29 -0.0
114,341 - GFF1922 0.55 -1.4
114,493 + GFF1922 0.66 -1.0

Or see this region's nucleotide sequence