Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1801

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1799 and GFF1800 are separated by 135 nucleotidesGFF1800 and GFF1801 are separated by 86 nucleotidesGFF1801 and GFF1802 are separated by 264 nucleotides GFF1799 - Putative inner membrane protein, at 21,302 to 21,628 GFF1799 GFF1800 - Transcriptional regulatory protein RstA, at 21,764 to 22,495 GFF1800 GFF1801 - hypothetical protein, at 22,582 to 22,710 GFF1801 GFF1802 - Outer membrane protein N precursor, at 22,975 to 24,108 GFF1802 Position (kb) 22 23Strain fitness (log2 ratio) -2 -1 0 1 2at 21.672 kb on + strandat 21.838 kb on + strand, within GFF1800at 21.912 kb on + strand, within GFF1800at 21.951 kb on + strand, within GFF1800at 22.304 kb on - strand, within GFF1800at 22.347 kb on - strand, within GFF1800at 22.430 kb on - strandat 22.494 kb on - strandat 22.513 kb on - strandat 22.533 kb on - strandat 22.580 kb on - strandat 22.596 kb on + strand, within GFF1801at 23.142 kb on + strand, within GFF1802at 23.230 kb on - strand, within GFF1802at 23.316 kb on + strand, within GFF1802at 23.383 kb on + strand, within GFF1802at 23.383 kb on + strand, within GFF1802at 23.389 kb on + strand, within GFF1802at 23.600 kb on - strand, within GFF1802at 23.671 kb on + strand, within GFF1802at 23.692 kb on - strand, within GFF1802

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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21,672 + -0.7
21,838 + GFF1800 0.10 -0.1
21,912 + GFF1800 0.20 -0.6
21,951 + GFF1800 0.26 +0.2
22,304 - GFF1800 0.74 +2.2
22,347 - GFF1800 0.80 +0.0
22,430 - -0.1
22,494 - +0.7
22,513 - -2.2
22,533 - +0.1
22,580 - +0.8
22,596 + GFF1801 0.11 -1.0
23,142 + GFF1802 0.15 -0.6
23,230 - GFF1802 0.22 -0.9
23,316 + GFF1802 0.30 -0.6
23,383 + GFF1802 0.36 -1.0
23,383 + GFF1802 0.36 +0.2
23,389 + GFF1802 0.37 -0.2
23,600 - GFF1802 0.55 -1.8
23,671 + GFF1802 0.61 -1.2
23,692 - GFF1802 0.63 +1.3

Or see this region's nucleotide sequence