Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1760

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1759 and GFF1760 are separated by 16 nucleotidesGFF1760 and GFF1761 are separated by 305 nucleotides GFF1759 - Putative mandelate racemase STM3833, at 62,014 to 63,204 GFF1759 GFF1760 - Putative permease, at 63,221 to 64,483 GFF1760 GFF1761 - Promiscuous sugar phosphatase YidA, haloacid dehalogenase-like phosphatase family, at 64,789 to 65,634 GFF1761 Position (kb) 63 64 65Strain fitness (log2 ratio) -1 0 1at 62.319 kb on + strand, within GFF1759at 62.481 kb on - strand, within GFF1759at 62.562 kb on + strand, within GFF1759at 62.601 kb on + strand, within GFF1759at 62.748 kb on - strand, within GFF1759at 62.770 kb on - strand, within GFF1759at 62.776 kb on - strand, within GFF1759at 62.776 kb on - strand, within GFF1759at 62.857 kb on - strand, within GFF1759at 62.985 kb on + strand, within GFF1759at 63.499 kb on - strand, within GFF1760at 63.499 kb on - strand, within GFF1760at 63.689 kb on + strand, within GFF1760at 63.694 kb on - strand, within GFF1760at 64.266 kb on - strand, within GFF1760at 64.648 kb on + strandat 64.797 kb on + strandat 64.946 kb on - strand, within GFF1761at 64.981 kb on + strand, within GFF1761at 64.994 kb on - strand, within GFF1761at 64.996 kb on - strand, within GFF1761at 65.056 kb on + strand, within GFF1761at 65.056 kb on + strand, within GFF1761at 65.057 kb on - strand, within GFF1761at 65.065 kb on + strand, within GFF1761at 65.072 kb on - strand, within GFF1761at 65.118 kb on - strand, within GFF1761at 65.135 kb on - strand, within GFF1761at 65.158 kb on + strand, within GFF1761at 65.162 kb on - strand, within GFF1761at 65.162 kb on - strand, within GFF1761at 65.162 kb on - strand, within GFF1761at 65.180 kb on - strand, within GFF1761at 65.250 kb on + strand, within GFF1761at 65.419 kb on - strand, within GFF1761at 65.419 kb on - strand, within GFF1761

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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62,319 + GFF1759 0.26 +0.2
62,481 - GFF1759 0.39 -0.2
62,562 + GFF1759 0.46 -1.0
62,601 + GFF1759 0.49 -0.0
62,748 - GFF1759 0.62 -0.0
62,770 - GFF1759 0.63 +0.2
62,776 - GFF1759 0.64 +0.4
62,776 - GFF1759 0.64 -0.0
62,857 - GFF1759 0.71 +1.0
62,985 + GFF1759 0.82 -0.0
63,499 - GFF1760 0.22 -1.2
63,499 - GFF1760 0.22 +0.5
63,689 + GFF1760 0.37 -0.6
63,694 - GFF1760 0.37 -0.6
64,266 - GFF1760 0.83 -1.4
64,648 + -0.6
64,797 + +1.6
64,946 - GFF1761 0.19 -0.0
64,981 + GFF1761 0.23 -0.5
64,994 - GFF1761 0.24 -0.7
64,996 - GFF1761 0.24 -0.4
65,056 + GFF1761 0.32 -0.3
65,056 + GFF1761 0.32 -0.2
65,057 - GFF1761 0.32 -0.5
65,065 + GFF1761 0.33 +0.2
65,072 - GFF1761 0.33 +0.8
65,118 - GFF1761 0.39 -0.1
65,135 - GFF1761 0.41 -0.2
65,158 + GFF1761 0.44 -0.5
65,162 - GFF1761 0.44 -0.4
65,162 - GFF1761 0.44 +0.0
65,162 - GFF1761 0.44 -0.6
65,180 - GFF1761 0.46 -0.6
65,250 + GFF1761 0.54 -0.3
65,419 - GFF1761 0.74 -0.3
65,419 - GFF1761 0.74 -0.5

Or see this region's nucleotide sequence