Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1747

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1746 and GFF1747 overlap by 1 nucleotidesGFF1747 and GFF1748 are separated by 324 nucleotides GFF1746 - Retron-type RNA-directed DNA polymerase (EC 2.7.7.49), at 46,564 to 47,499 GFF1746 GFF1747 - putative inner membrane protein, at 47,499 to 48,461 GFF1747 GFF1748 - Integrase, at 48,786 to 49,496 GFF1748 Position (kb) 47 48 49Strain fitness (log2 ratio) -1 0 1 2at 48.319 kb on - strand, within GFF1747at 48.354 kb on + strand, within GFF1747at 48.639 kb on + strandat 48.740 kb on - strandat 48.740 kb on - strandat 48.740 kb on - strandat 48.745 kb on - strandat 48.919 kb on + strand, within GFF1748at 48.920 kb on - strand, within GFF1748at 48.993 kb on + strand, within GFF1748at 48.993 kb on + strand, within GFF1748at 48.993 kb on + strand, within GFF1748at 48.993 kb on + strand, within GFF1748at 48.993 kb on + strand, within GFF1748at 48.994 kb on - strand, within GFF1748at 49.127 kb on - strand, within GFF1748at 49.196 kb on + strand, within GFF1748at 49.196 kb on + strand, within GFF1748at 49.196 kb on + strand, within GFF1748at 49.196 kb on + strand, within GFF1748at 49.197 kb on - strand, within GFF1748at 49.292 kb on + strand, within GFF1748at 49.350 kb on - strand, within GFF1748at 49.357 kb on + strand, within GFF1748at 49.358 kb on - strand, within GFF1748at 49.428 kb on - strandat 49.428 kb on - strandat 49.429 kb on + strandat 49.442 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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48,319 - GFF1747 0.85 -0.1
48,354 + GFF1747 0.89 -1.4
48,639 + +0.7
48,740 - -0.3
48,740 - -0.4
48,740 - +0.5
48,745 - -0.4
48,919 + GFF1748 0.19 +0.6
48,920 - GFF1748 0.19 +0.0
48,993 + GFF1748 0.29 +0.2
48,993 + GFF1748 0.29 +0.2
48,993 + GFF1748 0.29 +0.6
48,993 + GFF1748 0.29 +2.5
48,993 + GFF1748 0.29 +0.7
48,994 - GFF1748 0.29 -0.3
49,127 - GFF1748 0.48 +0.8
49,196 + GFF1748 0.58 +0.2
49,196 + GFF1748 0.58 +0.1
49,196 + GFF1748 0.58 -0.2
49,196 + GFF1748 0.58 -0.0
49,197 - GFF1748 0.58 -0.4
49,292 + GFF1748 0.71 -0.1
49,350 - GFF1748 0.79 +0.0
49,357 + GFF1748 0.80 +1.0
49,358 - GFF1748 0.80 -0.5
49,428 - -0.4
49,428 - +0.2
49,429 + +0.0
49,442 + +1.5

Or see this region's nucleotide sequence