Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1641

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1639 and GFF1640 are separated by 8 nucleotidesGFF1640 and GFF1641 are separated by 174 nucleotidesGFF1641 and GFF1642 are separated by 32 nucleotides GFF1639 - Holliday junction DNA helicase RuvB, at 25,475 to 26,485 GFF1639 GFF1640 - Holliday junction DNA helicase RuvA, at 26,494 to 27,105 GFF1640 GFF1641 - hypothetical protein, at 27,280 to 27,405 GFF1641 GFF1642 - putative cytoplasmic protein, at 27,438 to 28,421 GFF1642 Position (kb) 27 28Strain fitness (log2 ratio) -1 0 1at 27.019 kb on - strand, within GFF1640at 27.150 kb on - strandat 27.196 kb on + strandat 27.390 kb on - strand, within GFF1641at 27.553 kb on - strand, within GFF1642

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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27,019 - GFF1640 0.86 -1.3
27,150 - +0.5
27,196 + -1.0
27,390 - GFF1641 0.87 -1.1
27,553 - GFF1642 0.12 -0.4

Or see this region's nucleotide sequence