Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1631

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1630 and GFF1631 are separated by 234 nucleotidesGFF1631 and GFF1632 are separated by 341 nucleotides GFF1630 - Phosphogluconate dehydratase (EC 4.2.1.12), at 14,042 to 15,853 GFF1630 GFF1631 - Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49), at 16,088 to 17,563 GFF1631 GFF1632 - Phosphogluconate repressor HexR, RpiR family, at 17,905 to 18,774 GFF1632 Position (kb) 16 17 18Strain fitness (log2 ratio) -2 -1 0 1 2 3at 15.210 kb on + strand, within GFF1630at 15.267 kb on - strand, within GFF1630at 15.425 kb on - strand, within GFF1630at 15.441 kb on - strand, within GFF1630at 15.584 kb on - strand, within GFF1630at 15.667 kb on + strand, within GFF1630at 15.667 kb on + strand, within GFF1630at 15.787 kb on - strandat 16.379 kb on - strand, within GFF1631at 16.395 kb on - strand, within GFF1631at 16.415 kb on - strand, within GFF1631at 16.564 kb on - strand, within GFF1631at 16.966 kb on + strand, within GFF1631at 16.977 kb on - strand, within GFF1631at 17.046 kb on + strand, within GFF1631at 17.049 kb on - strand, within GFF1631at 17.391 kb on + strand, within GFF1631at 17.391 kb on + strand, within GFF1631at 17.580 kb on - strandat 17.591 kb on - strandat 17.612 kb on + strandat 17.633 kb on + strandat 17.701 kb on + strandat 17.702 kb on - strandat 17.702 kb on - strandat 17.702 kb on - strandat 17.702 kb on - strandat 17.703 kb on + strandat 17.704 kb on - strandat 17.776 kb on + strandat 17.836 kb on - strandat 17.838 kb on + strandat 17.910 kb on + strandat 18.008 kb on + strand, within GFF1632at 18.142 kb on + strand, within GFF1632at 18.143 kb on - strand, within GFF1632at 18.184 kb on + strand, within GFF1632at 18.186 kb on + strand, within GFF1632at 18.187 kb on - strand, within GFF1632at 18.275 kb on + strand, within GFF1632at 18.348 kb on + strand, within GFF1632at 18.415 kb on - strand, within GFF1632

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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15,210 + GFF1630 0.64 +1.0
15,267 - GFF1630 0.68 +0.4
15,425 - GFF1630 0.76 -0.6
15,441 - GFF1630 0.77 +0.0
15,584 - GFF1630 0.85 -1.1
15,667 + GFF1630 0.90 -0.6
15,667 + GFF1630 0.90 -0.6
15,787 - +1.3
16,379 - GFF1631 0.20 +0.6
16,395 - GFF1631 0.21 +0.5
16,415 - GFF1631 0.22 +0.5
16,564 - GFF1631 0.32 +2.8
16,966 + GFF1631 0.59 +2.3
16,977 - GFF1631 0.60 +0.8
17,046 + GFF1631 0.65 -0.8
17,049 - GFF1631 0.65 -0.4
17,391 + GFF1631 0.88 +1.7
17,391 + GFF1631 0.88 +1.4
17,580 - -0.3
17,591 - +1.3
17,612 + +1.6
17,633 + -0.7
17,701 + +0.1
17,702 - -0.5
17,702 - +0.8
17,702 - -1.0
17,702 - -0.8
17,703 + -0.1
17,704 - -0.7
17,776 + -0.1
17,836 - -1.1
17,838 + -0.1
17,910 + +0.3
18,008 + GFF1632 0.12 -1.5
18,142 + GFF1632 0.27 -0.9
18,143 - GFF1632 0.27 -1.2
18,184 + GFF1632 0.32 -0.8
18,186 + GFF1632 0.32 -0.4
18,187 - GFF1632 0.32 -0.6
18,275 + GFF1632 0.43 -1.9
18,348 + GFF1632 0.51 +0.6
18,415 - GFF1632 0.59 +0.5

Or see this region's nucleotide sequence