Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1315

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1313 and GFF1314 are separated by 35 nucleotidesGFF1314 and GFF1315 are separated by 181 nucleotidesGFF1315 and GFF1316 are separated by 169 nucleotidesGFF1316 and GFF1317 are separated by 250 nucleotides GFF1313 - hypothetical protein, at 22,028 to 22,153 GFF1313 GFF1314 - DNA mismatch repair endonuclease MutH, at 22,189 to 22,884 GFF1314 GFF1315 - FIG003462: membrane protein, at 23,066 to 23,779 GFF1315 GFF1316 - Hypothetical lipoprotein ygdR precursor, at 23,949 to 24,167 GFF1316 GFF1317 - Oxidoreductase, aldo/keto reductase family, at 24,418 to 25,398 GFF1317 Position (kb) 23 24Strain fitness (log2 ratio) -2 -1 0 1at 22.151 kb on + strandat 22.187 kb on + strandat 22.241 kb on + strandat 22.269 kb on + strand, within GFF1314at 22.269 kb on + strand, within GFF1314at 22.269 kb on + strand, within GFF1314at 22.269 kb on + strand, within GFF1314at 22.269 kb on + strand, within GFF1314at 22.270 kb on - strand, within GFF1314at 22.270 kb on - strand, within GFF1314at 22.416 kb on - strand, within GFF1314at 22.580 kb on + strand, within GFF1314at 22.649 kb on + strand, within GFF1314at 22.682 kb on + strand, within GFF1314at 22.683 kb on - strand, within GFF1314at 22.798 kb on - strand, within GFF1314at 22.919 kb on + strandat 22.947 kb on + strandat 22.947 kb on + strandat 22.948 kb on - strandat 22.953 kb on + strandat 23.029 kb on - strandat 23.030 kb on + strandat 23.035 kb on - strandat 23.070 kb on + strandat 23.070 kb on + strandat 23.137 kb on - strandat 23.137 kb on - strandat 23.137 kb on - strandat 23.156 kb on - strand, within GFF1315at 23.240 kb on - strand, within GFF1315at 23.476 kb on + strand, within GFF1315at 23.477 kb on - strand, within GFF1315at 23.530 kb on + strand, within GFF1315at 23.534 kb on - strand, within GFF1315at 23.704 kb on + strand, within GFF1315at 23.704 kb on + strand, within GFF1315at 23.708 kb on + strandat 23.759 kb on - strandat 23.810 kb on + strandat 23.820 kb on - strandat 23.884 kb on + strandat 23.885 kb on - strandat 23.902 kb on - strandat 23.902 kb on - strandat 23.916 kb on - strandat 23.932 kb on + strandat 23.932 kb on + strandat 23.980 kb on + strand, within GFF1316at 24.018 kb on + strand, within GFF1316at 24.022 kb on + strand, within GFF1316at 24.045 kb on - strand, within GFF1316at 24.099 kb on + strand, within GFF1316at 24.099 kb on + strand, within GFF1316at 24.100 kb on - strand, within GFF1316at 24.339 kb on + strandat 24.340 kb on - strandat 24.372 kb on + strandat 24.372 kb on + strandat 24.395 kb on + strandat 24.395 kb on + strandat 24.399 kb on + strandat 24.399 kb on + strandat 24.399 kb on + strandat 24.399 kb on + strandat 24.470 kb on - strandat 24.490 kb on - strandat 24.515 kb on - strandat 24.559 kb on + strand, within GFF1317at 24.560 kb on - strand, within GFF1317at 24.636 kb on + strand, within GFF1317

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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22,151 + +0.0
22,187 + +0.3
22,241 + -0.0
22,269 + GFF1314 0.11 -0.7
22,269 + GFF1314 0.11 -0.5
22,269 + GFF1314 0.11 +0.2
22,269 + GFF1314 0.11 +0.7
22,269 + GFF1314 0.11 +0.9
22,270 - GFF1314 0.12 -1.2
22,270 - GFF1314 0.12 +1.0
22,416 - GFF1314 0.33 -0.6
22,580 + GFF1314 0.56 +0.4
22,649 + GFF1314 0.66 -0.1
22,682 + GFF1314 0.71 +0.7
22,683 - GFF1314 0.71 -0.1
22,798 - GFF1314 0.88 +0.1
22,919 + -0.1
22,947 + -1.3
22,947 + -0.1
22,948 - -1.9
22,953 + +0.7
23,029 - -0.8
23,030 + +1.2
23,035 - -1.7
23,070 + -0.3
23,070 + -0.3
23,137 - -2.5
23,137 - -1.0
23,137 - -0.0
23,156 - GFF1315 0.13 -1.2
23,240 - GFF1315 0.24 -0.9
23,476 + GFF1315 0.57 -1.0
23,477 - GFF1315 0.58 -0.3
23,530 + GFF1315 0.65 -1.6
23,534 - GFF1315 0.66 -0.9
23,704 + GFF1315 0.89 -0.0
23,704 + GFF1315 0.89 -0.4
23,708 + +0.7
23,759 - -0.5
23,810 + -2.5
23,820 - -0.1
23,884 + -0.5
23,885 - -0.4
23,902 - -0.4
23,902 - +1.2
23,916 - +0.4
23,932 + -0.2
23,932 + -0.7
23,980 + GFF1316 0.14 +1.1
24,018 + GFF1316 0.32 -0.2
24,022 + GFF1316 0.33 -0.1
24,045 - GFF1316 0.44 +0.4
24,099 + GFF1316 0.68 -0.3
24,099 + GFF1316 0.68 +1.3
24,100 - GFF1316 0.69 +0.1
24,339 + +0.3
24,340 - +0.6
24,372 + -0.7
24,372 + +0.1
24,395 + -0.2
24,395 + +0.3
24,399 + +0.7
24,399 + -0.4
24,399 + -0.5
24,399 + -0.7
24,470 - +0.1
24,490 - +0.9
24,515 - +0.4
24,559 + GFF1317 0.14 +0.1
24,560 - GFF1317 0.14 +0.1
24,636 + GFF1317 0.22 +0.0

Or see this region's nucleotide sequence