Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1109

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1107 and GFF1108 are separated by 99 nucleotidesGFF1108 and GFF1109 are separated by 369 nucleotidesGFF1109 and GFF1110 are separated by 7 nucleotidesGFF1110 and GFF1111 are separated by 11 nucleotidesGFF1111 and GFF1112 are separated by 364 nucleotides GFF1107 - Putative membrane protein, at 292,942 to 293,229 GFF1107 GFF1108 - Putative membrane protein, at 293,329 to 293,778 GFF1108 GFF1109 - Putative LysR family transcriptional regulator, at 294,148 to 295,152 GFF1109 GFF1110 - Putative transcription regulator, at 295,160 to 295,600 GFF1110 GFF1111 - hypothetical protein, at 295,612 to 295,758 GFF1111 GFF1112 - Possible sulfatase, at 296,123 to 297,841 GFF1112 Position (kb) 294 295 296Strain fitness (log2 ratio) -1 0 1at 294.844 kb on + strand, within GFF1109at 294.929 kb on - strand, within GFF1109at 296.098 kb on + strandat 296.098 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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294,844 + GFF1109 0.69 -0.8
294,929 - GFF1109 0.78 -0.0
296,098 + -0.1
296,098 + +0.7

Or see this region's nucleotide sequence