Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4428

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4427 and Echvi_4428 are separated by 517 nucleotidesEchvi_4428 and Echvi_4429 are separated by 158 nucleotidesEchvi_4429 and Echvi_4430 overlap by 38 nucleotides Echvi_4427: Echvi_4427 - Transcriptional regulator, at 5,295,115 to 5,295,720 _4427 Echvi_4428: Echvi_4428 - Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain, at 5,296,238 to 5,299,924 _4428 Echvi_4429: Echvi_4429 - tRNA, at 5,300,083 to 5,300,158 _4429 Echvi_4430: Echvi_4430 - Site-specific recombinases, DNA invertase Pin homologs, at 5,300,121 to 5,301,671 _4430 Position (kb) 5296 5297 5298 5299 5300Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5295.315 kb on + strand, within Echvi_4427at 5295.316 kb on - strand, within Echvi_4427at 5295.316 kb on - strand, within Echvi_4427at 5295.316 kb on - strand, within Echvi_4427at 5295.447 kb on - strand, within Echvi_4427at 5295.468 kb on - strand, within Echvi_4427at 5295.558 kb on + strand, within Echvi_4427at 5295.602 kb on + strand, within Echvi_4427at 5295.656 kb on + strand, within Echvi_4427at 5295.656 kb on + strand, within Echvi_4427at 5295.656 kb on + strand, within Echvi_4427at 5295.656 kb on + strand, within Echvi_4427at 5295.656 kb on + strand, within Echvi_4427at 5295.656 kb on + strand, within Echvi_4427at 5295.656 kb on + strand, within Echvi_4427at 5295.656 kb on + strand, within Echvi_4427at 5295.656 kb on + strand, within Echvi_4427at 5295.656 kb on + strand, within Echvi_4427at 5295.656 kb on + strand, within Echvi_4427at 5295.657 kb on - strand, within Echvi_4427at 5295.657 kb on - strand, within Echvi_4427at 5295.657 kb on - strand, within Echvi_4427at 5295.657 kb on - strand, within Echvi_4427at 5295.657 kb on - strand, within Echvi_4427at 5295.657 kb on - strand, within Echvi_4427at 5295.657 kb on - strand, within Echvi_4427at 5295.657 kb on - strand, within Echvi_4427at 5295.657 kb on - strand, within Echvi_4427at 5295.700 kb on + strandat 5295.701 kb on - strandat 5295.962 kb on + strandat 5295.994 kb on + strandat 5296.088 kb on + strandat 5296.093 kb on - strandat 5296.156 kb on + strandat 5299.990 kb on - strandat 5300.201 kb on + strandat 5300.208 kb on + strandat 5300.208 kb on + strandat 5300.209 kb on - strandat 5300.219 kb on + strandat 5300.231 kb on + strandat 5300.288 kb on + strand, within Echvi_4430at 5300.314 kb on - strand, within Echvi_4430at 5300.454 kb on + strand, within Echvi_4430at 5300.498 kb on + strand, within Echvi_4430at 5300.519 kb on - strand, within Echvi_4430at 5300.559 kb on + strand, within Echvi_4430at 5300.560 kb on - strand, within Echvi_4430at 5300.641 kb on - strand, within Echvi_4430at 5300.646 kb on + strand, within Echvi_4430at 5300.646 kb on + strand, within Echvi_4430at 5300.651 kb on + strand, within Echvi_4430at 5300.668 kb on + strand, within Echvi_4430at 5300.696 kb on + strand, within Echvi_4430at 5300.700 kb on + strand, within Echvi_4430at 5300.700 kb on + strand, within Echvi_4430at 5300.700 kb on + strand, within Echvi_4430at 5300.701 kb on - strand, within Echvi_4430at 5300.714 kb on + strand, within Echvi_4430at 5300.738 kb on + strand, within Echvi_4430at 5300.738 kb on + strand, within Echvi_4430at 5300.738 kb on + strand, within Echvi_4430at 5300.738 kb on + strand, within Echvi_4430at 5300.738 kb on + strand, within Echvi_4430at 5300.738 kb on + strand, within Echvi_4430at 5300.738 kb on + strand, within Echvi_4430at 5300.749 kb on + strand, within Echvi_4430at 5300.749 kb on + strand, within Echvi_4430at 5300.755 kb on + strand, within Echvi_4430at 5300.758 kb on + strand, within Echvi_4430at 5300.768 kb on + strand, within Echvi_4430at 5300.768 kb on + strand, within Echvi_4430at 5300.789 kb on + strand, within Echvi_4430at 5300.808 kb on - strand, within Echvi_4430at 5300.817 kb on + strand, within Echvi_4430at 5300.850 kb on + strand, within Echvi_4430

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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5,295,315 + Echvi_4427 0.33 +0.4
5,295,316 - Echvi_4427 0.33 -0.6
5,295,316 - Echvi_4427 0.33 +0.6
5,295,316 - Echvi_4427 0.33 +0.9
5,295,447 - Echvi_4427 0.55 -0.0
5,295,468 - Echvi_4427 0.58 +1.2
5,295,558 + Echvi_4427 0.73 +1.2
5,295,602 + Echvi_4427 0.80 -1.2
5,295,656 + Echvi_4427 0.89 +0.8
5,295,656 + Echvi_4427 0.89 -2.9
5,295,656 + Echvi_4427 0.89 -2.1
5,295,656 + Echvi_4427 0.89 +0.0
5,295,656 + Echvi_4427 0.89 +0.0
5,295,656 + Echvi_4427 0.89 -0.3
5,295,656 + Echvi_4427 0.89 -3.2
5,295,656 + Echvi_4427 0.89 -0.7
5,295,656 + Echvi_4427 0.89 +1.7
5,295,656 + Echvi_4427 0.89 +0.5
5,295,656 + Echvi_4427 0.89 +0.1
5,295,657 - Echvi_4427 0.89 -0.3
5,295,657 - Echvi_4427 0.89 -0.4
5,295,657 - Echvi_4427 0.89 +0.4
5,295,657 - Echvi_4427 0.89 -1.1
5,295,657 - Echvi_4427 0.89 -0.2
5,295,657 - Echvi_4427 0.89 -0.3
5,295,657 - Echvi_4427 0.89 -1.3
5,295,657 - Echvi_4427 0.89 -0.6
5,295,657 - Echvi_4427 0.89 +0.3
5,295,700 + -0.7
5,295,701 - -0.2
5,295,962 + -2.6
5,295,994 + -1.2
5,296,088 + +1.3
5,296,093 - +1.5
5,296,156 + -0.7
5,299,990 - +0.0
5,300,201 + -0.4
5,300,208 + -0.8
5,300,208 + -0.0
5,300,209 - +0.0
5,300,219 + +1.2
5,300,231 + +0.6
5,300,288 + Echvi_4430 0.11 +0.5
5,300,314 - Echvi_4430 0.12 -1.4
5,300,454 + Echvi_4430 0.21 -0.2
5,300,498 + Echvi_4430 0.24 +0.4
5,300,519 - Echvi_4430 0.26 -1.0
5,300,559 + Echvi_4430 0.28 -0.4
5,300,560 - Echvi_4430 0.28 -0.2
5,300,641 - Echvi_4430 0.34 +2.2
5,300,646 + Echvi_4430 0.34 -0.4
5,300,646 + Echvi_4430 0.34 -1.5
5,300,651 + Echvi_4430 0.34 +0.2
5,300,668 + Echvi_4430 0.35 -0.3
5,300,696 + Echvi_4430 0.37 +1.2
5,300,700 + Echvi_4430 0.37 -0.2
5,300,700 + Echvi_4430 0.37 -0.3
5,300,700 + Echvi_4430 0.37 -1.0
5,300,701 - Echvi_4430 0.37 +0.2
5,300,714 + Echvi_4430 0.38 +0.1
5,300,738 + Echvi_4430 0.40 -0.6
5,300,738 + Echvi_4430 0.40 +0.0
5,300,738 + Echvi_4430 0.40 +1.8
5,300,738 + Echvi_4430 0.40 +1.1
5,300,738 + Echvi_4430 0.40 -0.2
5,300,738 + Echvi_4430 0.40 -0.2
5,300,738 + Echvi_4430 0.40 -2.3
5,300,749 + Echvi_4430 0.40 +0.5
5,300,749 + Echvi_4430 0.40 +0.6
5,300,755 + Echvi_4430 0.41 +0.3
5,300,758 + Echvi_4430 0.41 -0.6
5,300,768 + Echvi_4430 0.42 +0.1
5,300,768 + Echvi_4430 0.42 +0.8
5,300,789 + Echvi_4430 0.43 +2.8
5,300,808 - Echvi_4430 0.44 +0.5
5,300,817 + Echvi_4430 0.45 -3.1
5,300,850 + Echvi_4430 0.47 +2.2

Or see this region's nucleotide sequence