Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4410

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4409 and Echvi_4410 are separated by 39 nucleotidesEchvi_4410 and Echvi_4411 are separated by 167 nucleotides Echvi_4409: Echvi_4409 - Nucleoside-diphosphate-sugar epimerases, at 5,272,315 to 5,273,403 _4409 Echvi_4410: Echvi_4410 - nucleotide sugar dehydrogenase, at 5,273,443 to 5,274,759 _4410 Echvi_4411: Echvi_4411 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 5,274,927 to 5,275,805 _4411 Position (kb) 5273 5274 5275Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5272.643 kb on + strand, within Echvi_4409at 5272.643 kb on + strand, within Echvi_4409at 5272.643 kb on + strand, within Echvi_4409at 5272.644 kb on - strand, within Echvi_4409at 5272.721 kb on + strand, within Echvi_4409at 5272.721 kb on + strand, within Echvi_4409at 5272.721 kb on + strand, within Echvi_4409at 5272.726 kb on - strand, within Echvi_4409at 5272.726 kb on - strand, within Echvi_4409at 5272.726 kb on - strand, within Echvi_4409at 5272.755 kb on + strand, within Echvi_4409at 5272.883 kb on + strand, within Echvi_4409at 5272.884 kb on - strand, within Echvi_4409at 5272.910 kb on - strand, within Echvi_4409at 5272.938 kb on - strand, within Echvi_4409at 5272.970 kb on - strand, within Echvi_4409at 5272.998 kb on - strand, within Echvi_4409at 5272.998 kb on - strand, within Echvi_4409at 5272.998 kb on - strand, within Echvi_4409at 5273.032 kb on + strand, within Echvi_4409at 5273.032 kb on + strand, within Echvi_4409at 5273.077 kb on + strand, within Echvi_4409at 5273.077 kb on + strand, within Echvi_4409at 5273.078 kb on - strand, within Echvi_4409at 5273.187 kb on + strand, within Echvi_4409at 5273.187 kb on + strand, within Echvi_4409at 5273.187 kb on + strand, within Echvi_4409at 5273.188 kb on - strand, within Echvi_4409at 5273.188 kb on - strand, within Echvi_4409at 5273.188 kb on - strand, within Echvi_4409at 5273.435 kb on - strandat 5273.441 kb on + strandat 5273.445 kb on - strandat 5273.486 kb on + strandat 5273.486 kb on + strandat 5273.493 kb on + strandat 5273.493 kb on + strandat 5273.493 kb on + strandat 5273.494 kb on - strandat 5273.498 kb on + strandat 5273.498 kb on + strandat 5273.498 kb on + strandat 5273.498 kb on + strandat 5273.499 kb on - strandat 5273.499 kb on - strandat 5273.526 kb on + strandat 5273.624 kb on + strand, within Echvi_4410at 5273.624 kb on + strand, within Echvi_4410at 5273.625 kb on - strand, within Echvi_4410at 5273.639 kb on + strand, within Echvi_4410at 5273.639 kb on + strand, within Echvi_4410at 5273.660 kb on + strand, within Echvi_4410at 5273.661 kb on - strand, within Echvi_4410at 5273.661 kb on - strand, within Echvi_4410at 5273.696 kb on + strand, within Echvi_4410at 5273.697 kb on - strand, within Echvi_4410at 5273.918 kb on + strand, within Echvi_4410at 5273.918 kb on + strand, within Echvi_4410at 5273.918 kb on + strand, within Echvi_4410at 5273.991 kb on - strand, within Echvi_4410at 5273.991 kb on - strand, within Echvi_4410at 5274.042 kb on + strand, within Echvi_4410at 5274.058 kb on + strand, within Echvi_4410at 5274.128 kb on + strand, within Echvi_4410at 5274.129 kb on - strand, within Echvi_4410at 5274.161 kb on + strand, within Echvi_4410at 5274.162 kb on - strand, within Echvi_4410at 5274.198 kb on - strand, within Echvi_4410at 5274.371 kb on - strand, within Echvi_4410at 5274.375 kb on + strand, within Echvi_4410at 5274.399 kb on + strand, within Echvi_4410at 5274.420 kb on + strand, within Echvi_4410at 5274.422 kb on + strand, within Echvi_4410at 5274.422 kb on + strand, within Echvi_4410at 5274.540 kb on + strand, within Echvi_4410at 5274.585 kb on - strand, within Echvi_4410at 5274.621 kb on - strand, within Echvi_4410at 5274.727 kb on + strandat 5274.728 kb on - strandat 5274.728 kb on - strandat 5274.728 kb on - strandat 5274.728 kb on - strandat 5274.742 kb on + strandat 5274.743 kb on - strandat 5274.745 kb on + strandat 5274.750 kb on + strandat 5274.773 kb on - strandat 5274.783 kb on + strandat 5274.783 kb on + strandat 5274.784 kb on - strandat 5274.798 kb on - strandat 5274.799 kb on + strandat 5274.802 kb on + strandat 5274.802 kb on + strandat 5274.802 kb on + strandat 5274.802 kb on + strandat 5274.859 kb on + strandat 5275.061 kb on - strand, within Echvi_4411at 5275.061 kb on - strand, within Echvi_4411at 5275.061 kb on - strand, within Echvi_4411at 5275.193 kb on + strand, within Echvi_4411at 5275.194 kb on - strand, within Echvi_4411at 5275.194 kb on - strand, within Echvi_4411at 5275.194 kb on - strand, within Echvi_4411at 5275.194 kb on - strand, within Echvi_4411at 5275.288 kb on - strand, within Echvi_4411at 5275.321 kb on - strand, within Echvi_4411at 5275.352 kb on + strand, within Echvi_4411at 5275.352 kb on + strand, within Echvi_4411at 5275.352 kb on + strand, within Echvi_4411at 5275.352 kb on + strand, within Echvi_4411at 5275.356 kb on + strand, within Echvi_4411at 5275.356 kb on + strand, within Echvi_4411at 5275.357 kb on - strand, within Echvi_4411at 5275.357 kb on - strand, within Echvi_4411at 5275.357 kb on - strand, within Echvi_4411at 5275.357 kb on - strand, within Echvi_4411at 5275.357 kb on - strand, within Echvi_4411at 5275.445 kb on - strand, within Echvi_4411at 5275.465 kb on + strand, within Echvi_4411at 5275.634 kb on + strand, within Echvi_4411at 5275.634 kb on + strand, within Echvi_4411at 5275.635 kb on - strand, within Echvi_4411at 5275.703 kb on + strand, within Echvi_4411at 5275.704 kb on - strand, within Echvi_4411at 5275.704 kb on - strand, within Echvi_4411

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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5,272,643 + Echvi_4409 0.30 -1.5
5,272,643 + Echvi_4409 0.30 -1.3
5,272,643 + Echvi_4409 0.30 +0.0
5,272,644 - Echvi_4409 0.30 +1.1
5,272,721 + Echvi_4409 0.37 -0.2
5,272,721 + Echvi_4409 0.37 -0.8
5,272,721 + Echvi_4409 0.37 -0.3
5,272,726 - Echvi_4409 0.38 +0.6
5,272,726 - Echvi_4409 0.38 -0.2
5,272,726 - Echvi_4409 0.38 -1.2
5,272,755 + Echvi_4409 0.40 +0.4
5,272,883 + Echvi_4409 0.52 -0.6
5,272,884 - Echvi_4409 0.52 +0.5
5,272,910 - Echvi_4409 0.55 -1.3
5,272,938 - Echvi_4409 0.57 +1.2
5,272,970 - Echvi_4409 0.60 -2.0
5,272,998 - Echvi_4409 0.63 +0.0
5,272,998 - Echvi_4409 0.63 -1.4
5,272,998 - Echvi_4409 0.63 +1.4
5,273,032 + Echvi_4409 0.66 +3.1
5,273,032 + Echvi_4409 0.66 -0.7
5,273,077 + Echvi_4409 0.70 -0.2
5,273,077 + Echvi_4409 0.70 +0.4
5,273,078 - Echvi_4409 0.70 +0.1
5,273,187 + Echvi_4409 0.80 -0.4
5,273,187 + Echvi_4409 0.80 +0.2
5,273,187 + Echvi_4409 0.80 -0.1
5,273,188 - Echvi_4409 0.80 -1.4
5,273,188 - Echvi_4409 0.80 +0.8
5,273,188 - Echvi_4409 0.80 +0.9
5,273,435 - +1.6
5,273,441 + -1.2
5,273,445 - -0.5
5,273,486 + -0.8
5,273,486 + -1.9
5,273,493 + +0.5
5,273,493 + -0.6
5,273,493 + +0.8
5,273,494 - +0.1
5,273,498 + +1.0
5,273,498 + -0.1
5,273,498 + -0.4
5,273,498 + +0.1
5,273,499 - +0.0
5,273,499 - +1.8
5,273,526 + -0.2
5,273,624 + Echvi_4410 0.14 +2.1
5,273,624 + Echvi_4410 0.14 +1.4
5,273,625 - Echvi_4410 0.14 +0.3
5,273,639 + Echvi_4410 0.15 +0.4
5,273,639 + Echvi_4410 0.15 +0.2
5,273,660 + Echvi_4410 0.16 +1.8
5,273,661 - Echvi_4410 0.17 +0.6
5,273,661 - Echvi_4410 0.17 -1.3
5,273,696 + Echvi_4410 0.19 -0.4
5,273,697 - Echvi_4410 0.19 +1.0
5,273,918 + Echvi_4410 0.36 +2.7
5,273,918 + Echvi_4410 0.36 +1.0
5,273,918 + Echvi_4410 0.36 +0.5
5,273,991 - Echvi_4410 0.42 -0.3
5,273,991 - Echvi_4410 0.42 -0.6
5,274,042 + Echvi_4410 0.45 +1.8
5,274,058 + Echvi_4410 0.47 +1.5
5,274,128 + Echvi_4410 0.52 +0.5
5,274,129 - Echvi_4410 0.52 +1.8
5,274,161 + Echvi_4410 0.55 -0.8
5,274,162 - Echvi_4410 0.55 -0.4
5,274,198 - Echvi_4410 0.57 +3.1
5,274,371 - Echvi_4410 0.70 +1.8
5,274,375 + Echvi_4410 0.71 -0.5
5,274,399 + Echvi_4410 0.73 +0.8
5,274,420 + Echvi_4410 0.74 -0.4
5,274,422 + Echvi_4410 0.74 +0.9
5,274,422 + Echvi_4410 0.74 +0.7
5,274,540 + Echvi_4410 0.83 -0.5
5,274,585 - Echvi_4410 0.87 -2.0
5,274,621 - Echvi_4410 0.89 -0.3
5,274,727 + +1.1
5,274,728 - +2.5
5,274,728 - -0.3
5,274,728 - -0.2
5,274,728 - -1.9
5,274,742 + +0.6
5,274,743 - +1.6
5,274,745 + -1.1
5,274,750 + -0.2
5,274,773 - -0.4
5,274,783 + -0.0
5,274,783 + -2.2
5,274,784 - -0.1
5,274,798 - +0.6
5,274,799 + +1.2
5,274,802 + +0.2
5,274,802 + -0.0
5,274,802 + +0.7
5,274,802 + -0.8
5,274,859 + +1.8
5,275,061 - Echvi_4411 0.15 -1.9
5,275,061 - Echvi_4411 0.15 -2.2
5,275,061 - Echvi_4411 0.15 +1.2
5,275,193 + Echvi_4411 0.30 -1.3
5,275,194 - Echvi_4411 0.30 +0.0
5,275,194 - Echvi_4411 0.30 -2.7
5,275,194 - Echvi_4411 0.30 -0.3
5,275,194 - Echvi_4411 0.30 -1.1
5,275,288 - Echvi_4411 0.41 -2.7
5,275,321 - Echvi_4411 0.45 -1.6
5,275,352 + Echvi_4411 0.48 +0.0
5,275,352 + Echvi_4411 0.48 +0.8
5,275,352 + Echvi_4411 0.48 -0.5
5,275,352 + Echvi_4411 0.48 -3.0
5,275,356 + Echvi_4411 0.49 +0.1
5,275,356 + Echvi_4411 0.49 -0.8
5,275,357 - Echvi_4411 0.49 +0.1
5,275,357 - Echvi_4411 0.49 +0.9
5,275,357 - Echvi_4411 0.49 +0.6
5,275,357 - Echvi_4411 0.49 -1.0
5,275,357 - Echvi_4411 0.49 +1.2
5,275,445 - Echvi_4411 0.59 -0.4
5,275,465 + Echvi_4411 0.61 -0.8
5,275,634 + Echvi_4411 0.80 -1.0
5,275,634 + Echvi_4411 0.80 -0.2
5,275,635 - Echvi_4411 0.81 +1.0
5,275,703 + Echvi_4411 0.88 +2.0
5,275,704 - Echvi_4411 0.88 +0.3
5,275,704 - Echvi_4411 0.88 +0.2

Or see this region's nucleotide sequence