Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3949 and Echvi_3950 are separated by 169 nucleotides Echvi_3950 and Echvi_3951 are separated by 144 nucleotides
Echvi_3949: Echvi_3949 - polyphosphate:nucleotide phosphotransferase, PPK2 family, at 4,733,222 to 4,734,100
_3949
Echvi_3950: Echvi_3950 - Glycine/D-amino acid oxidases (deaminating), at 4,734,270 to 4,735,520
_3950
Echvi_3951: Echvi_3951 - Proline racemase, at 4,735,665 to 4,736,663
_3951
Position (kb)
4734
4735
4736 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4733.280 kb on - strand at 4733.290 kb on - strand at 4733.322 kb on + strand, within Echvi_3949 at 4733.322 kb on + strand, within Echvi_3949 at 4733.322 kb on + strand, within Echvi_3949 at 4733.323 kb on - strand, within Echvi_3949 at 4733.323 kb on - strand, within Echvi_3949 at 4733.323 kb on - strand, within Echvi_3949 at 4733.326 kb on + strand, within Echvi_3949 at 4733.327 kb on - strand, within Echvi_3949 at 4733.327 kb on - strand, within Echvi_3949 at 4733.377 kb on + strand, within Echvi_3949 at 4733.379 kb on + strand, within Echvi_3949 at 4733.379 kb on + strand, within Echvi_3949 at 4733.379 kb on + strand, within Echvi_3949 at 4733.379 kb on + strand, within Echvi_3949 at 4733.380 kb on - strand, within Echvi_3949 at 4733.404 kb on + strand, within Echvi_3949 at 4733.408 kb on - strand, within Echvi_3949 at 4733.425 kb on - strand, within Echvi_3949 at 4733.428 kb on - strand, within Echvi_3949 at 4733.436 kb on + strand, within Echvi_3949 at 4733.437 kb on - strand, within Echvi_3949 at 4733.521 kb on + strand, within Echvi_3949 at 4733.641 kb on + strand, within Echvi_3949 at 4733.660 kb on + strand, within Echvi_3949 at 4733.660 kb on + strand, within Echvi_3949 at 4733.688 kb on + strand, within Echvi_3949 at 4733.688 kb on + strand, within Echvi_3949 at 4733.688 kb on + strand, within Echvi_3949 at 4733.689 kb on - strand, within Echvi_3949 at 4733.715 kb on - strand, within Echvi_3949 at 4733.737 kb on + strand, within Echvi_3949 at 4733.771 kb on + strand, within Echvi_3949 at 4733.771 kb on + strand, within Echvi_3949 at 4733.771 kb on + strand, within Echvi_3949 at 4733.772 kb on - strand, within Echvi_3949 at 4733.772 kb on - strand, within Echvi_3949 at 4733.772 kb on - strand, within Echvi_3949 at 4733.773 kb on + strand, within Echvi_3949 at 4733.775 kb on + strand, within Echvi_3949 at 4733.775 kb on + strand, within Echvi_3949 at 4733.775 kb on + strand, within Echvi_3949 at 4733.776 kb on - strand, within Echvi_3949 at 4733.776 kb on - strand, within Echvi_3949 at 4733.776 kb on - strand, within Echvi_3949 at 4733.776 kb on - strand, within Echvi_3949 at 4733.776 kb on - strand, within Echvi_3949 at 4733.776 kb on - strand, within Echvi_3949 at 4733.776 kb on - strand, within Echvi_3949 at 4733.776 kb on - strand, within Echvi_3949 at 4733.776 kb on - strand, within Echvi_3949 at 4733.791 kb on - strand, within Echvi_3949 at 4733.810 kb on - strand, within Echvi_3949 at 4733.812 kb on + strand, within Echvi_3949 at 4733.812 kb on + strand, within Echvi_3949 at 4733.812 kb on + strand, within Echvi_3949 at 4733.813 kb on - strand, within Echvi_3949 at 4733.813 kb on - strand, within Echvi_3949 at 4733.813 kb on - strand, within Echvi_3949 at 4733.813 kb on - strand, within Echvi_3949 at 4733.831 kb on - strand, within Echvi_3949 at 4733.831 kb on - strand, within Echvi_3949 at 4733.841 kb on - strand, within Echvi_3949 at 4733.854 kb on + strand, within Echvi_3949 at 4733.929 kb on + strand, within Echvi_3949 at 4733.931 kb on + strand, within Echvi_3949 at 4733.932 kb on - strand, within Echvi_3949 at 4733.932 kb on - strand, within Echvi_3949 at 4733.932 kb on - strand, within Echvi_3949 at 4733.932 kb on - strand, within Echvi_3949 at 4733.932 kb on - strand, within Echvi_3949 at 4733.932 kb on - strand at 4733.932 kb on - strand, within Echvi_3949 at 4733.960 kb on + strand, within Echvi_3949 at 4733.960 kb on + strand, within Echvi_3949 at 4733.970 kb on - strand, within Echvi_3949 at 4733.983 kb on + strand, within Echvi_3949 at 4734.042 kb on - strand at 4734.042 kb on - strand at 4734.079 kb on - strand at 4734.079 kb on - strand at 4734.117 kb on + strand at 4734.143 kb on + strand at 4734.155 kb on + strand at 4734.155 kb on + strand at 4734.156 kb on - strand at 4734.171 kb on - strand at 4734.171 kb on - strand at 4734.253 kb on + strand at 4734.253 kb on + strand at 4734.253 kb on + strand at 4734.253 kb on + strand at 4734.253 kb on + strand at 4734.254 kb on - strand at 4734.254 kb on - strand at 4734.372 kb on + strand at 4734.373 kb on - strand at 4734.386 kb on + strand at 4734.436 kb on + strand, within Echvi_3950 at 4734.436 kb on + strand, within Echvi_3950 at 4734.437 kb on - strand, within Echvi_3950 at 4734.517 kb on + strand, within Echvi_3950 at 4734.518 kb on - strand, within Echvi_3950 at 4734.520 kb on + strand, within Echvi_3950 at 4734.520 kb on + strand, within Echvi_3950 at 4734.521 kb on - strand, within Echvi_3950 at 4734.521 kb on - strand, within Echvi_3950 at 4734.521 kb on - strand, within Echvi_3950 at 4734.529 kb on - strand, within Echvi_3950 at 4734.560 kb on + strand, within Echvi_3950 at 4734.565 kb on - strand, within Echvi_3950 at 4734.656 kb on + strand, within Echvi_3950 at 4734.680 kb on + strand, within Echvi_3950 at 4734.699 kb on - strand, within Echvi_3950 at 4734.700 kb on + strand, within Echvi_3950 at 4734.825 kb on + strand, within Echvi_3950 at 4734.826 kb on - strand, within Echvi_3950 at 4734.866 kb on + strand, within Echvi_3950 at 4734.866 kb on + strand, within Echvi_3950 at 4734.867 kb on - strand, within Echvi_3950 at 4734.867 kb on - strand, within Echvi_3950 at 4734.867 kb on - strand, within Echvi_3950 at 4734.957 kb on + strand, within Echvi_3950 at 4734.999 kb on - strand, within Echvi_3950 at 4735.004 kb on + strand, within Echvi_3950 at 4735.123 kb on - strand, within Echvi_3950 at 4735.166 kb on - strand, within Echvi_3950 at 4735.181 kb on - strand, within Echvi_3950 at 4735.181 kb on - strand, within Echvi_3950 at 4735.188 kb on - strand, within Echvi_3950 at 4735.202 kb on - strand, within Echvi_3950 at 4735.293 kb on - strand, within Echvi_3950 at 4735.294 kb on + strand, within Echvi_3950 at 4735.367 kb on + strand, within Echvi_3950 at 4735.367 kb on + strand, within Echvi_3950 at 4735.368 kb on - strand, within Echvi_3950 at 4735.468 kb on + strand at 4735.486 kb on - strand at 4735.486 kb on - strand at 4735.520 kb on + strand at 4735.520 kb on + strand at 4735.521 kb on - strand at 4735.521 kb on - strand at 4735.628 kb on + strand at 4735.632 kb on + strand at 4735.690 kb on + strand at 4735.691 kb on - strand at 4735.691 kb on - strand at 4735.718 kb on + strand at 4735.723 kb on + strand at 4735.723 kb on + strand at 4735.724 kb on - strand at 4735.771 kb on + strand, within Echvi_3951 at 4735.771 kb on + strand, within Echvi_3951 at 4735.826 kb on - strand, within Echvi_3951 at 4735.826 kb on - strand, within Echvi_3951 at 4735.860 kb on + strand, within Echvi_3951 at 4736.043 kb on - strand, within Echvi_3951 at 4736.043 kb on - strand, within Echvi_3951 at 4736.044 kb on + strand, within Echvi_3951 at 4736.085 kb on - strand, within Echvi_3951 at 4736.261 kb on + strand, within Echvi_3951 at 4736.262 kb on - strand, within Echvi_3951 at 4736.282 kb on + strand, within Echvi_3951 at 4736.282 kb on + strand, within Echvi_3951 at 4736.282 kb on + strand, within Echvi_3951 at 4736.283 kb on - strand, within Echvi_3951 at 4736.283 kb on - strand, within Echvi_3951 at 4736.334 kb on + strand, within Echvi_3951 at 4736.387 kb on + strand, within Echvi_3951 at 4736.428 kb on + strand, within Echvi_3951 at 4736.429 kb on - strand, within Echvi_3951 at 4736.489 kb on + strand, within Echvi_3951 at 4736.489 kb on + strand, within Echvi_3951 at 4736.489 kb on + strand, within Echvi_3951 at 4736.489 kb on + strand, within Echvi_3951 at 4736.489 kb on + strand, within Echvi_3951 at 4736.489 kb on + strand, within Echvi_3951 at 4736.490 kb on - strand, within Echvi_3951 at 4736.490 kb on - strand, within Echvi_3951 at 4736.490 kb on - strand, within Echvi_3951 at 4736.490 kb on - strand, within Echvi_3951 at 4736.490 kb on - strand, within Echvi_3951
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 4,733,280 - -0.6 4,733,290 - -0.6 4,733,322 + Echvi_3949 0.11 +1.3 4,733,322 + Echvi_3949 0.11 -1.1 4,733,322 + Echvi_3949 0.11 -1.6 4,733,323 - Echvi_3949 0.11 +1.9 4,733,323 - Echvi_3949 0.11 +0.5 4,733,323 - Echvi_3949 0.11 -0.6 4,733,326 + Echvi_3949 0.12 +0.9 4,733,327 - Echvi_3949 0.12 +0.7 4,733,327 - Echvi_3949 0.12 -0.6 4,733,377 + Echvi_3949 0.18 +1.5 4,733,379 + Echvi_3949 0.18 -1.5 4,733,379 + Echvi_3949 0.18 +0.1 4,733,379 + Echvi_3949 0.18 -2.4 4,733,379 + Echvi_3949 0.18 +0.7 4,733,380 - Echvi_3949 0.18 -1.3 4,733,404 + Echvi_3949 0.21 -1.2 4,733,408 - Echvi_3949 0.21 +0.4 4,733,425 - Echvi_3949 0.23 +2.2 4,733,428 - Echvi_3949 0.23 -0.4 4,733,436 + Echvi_3949 0.24 -1.0 4,733,437 - Echvi_3949 0.24 -2.7 4,733,521 + Echvi_3949 0.34 +0.9 4,733,641 + Echvi_3949 0.48 -0.2 4,733,660 + Echvi_3949 0.50 +1.4 4,733,660 + Echvi_3949 0.50 +0.7 4,733,688 + Echvi_3949 0.53 -0.1 4,733,688 + Echvi_3949 0.53 -0.3 4,733,688 + Echvi_3949 0.53 -0.3 4,733,689 - Echvi_3949 0.53 -1.0 4,733,715 - Echvi_3949 0.56 -0.1 4,733,737 + Echvi_3949 0.59 +0.5 4,733,771 + Echvi_3949 0.62 -0.4 4,733,771 + Echvi_3949 0.62 +0.6 4,733,771 + Echvi_3949 0.62 -0.5 4,733,772 - Echvi_3949 0.63 -0.5 4,733,772 - Echvi_3949 0.63 -1.0 4,733,772 - Echvi_3949 0.63 -0.7 4,733,773 + Echvi_3949 0.63 -0.7 4,733,775 + Echvi_3949 0.63 -0.6 4,733,775 + Echvi_3949 0.63 -0.5 4,733,775 + Echvi_3949 0.63 -0.9 4,733,776 - Echvi_3949 0.63 +0.4 4,733,776 - Echvi_3949 0.63 +1.0 4,733,776 - Echvi_3949 0.63 +0.5 4,733,776 - Echvi_3949 0.63 +0.5 4,733,776 - Echvi_3949 0.63 -2.1 4,733,776 - Echvi_3949 0.63 +2.9 4,733,776 - Echvi_3949 0.63 -1.2 4,733,776 - Echvi_3949 0.63 -2.9 4,733,776 - Echvi_3949 0.63 -1.6 4,733,791 - Echvi_3949 0.65 -0.9 4,733,810 - Echvi_3949 0.67 +1.7 4,733,812 + Echvi_3949 0.67 -1.2 4,733,812 + Echvi_3949 0.67 -0.1 4,733,812 + Echvi_3949 0.67 -0.6 4,733,813 - Echvi_3949 0.67 +0.1 4,733,813 - Echvi_3949 0.67 -2.0 4,733,813 - Echvi_3949 0.67 -0.8 4,733,813 - Echvi_3949 0.67 +2.0 4,733,831 - Echvi_3949 0.69 +0.3 4,733,831 - Echvi_3949 0.69 +2.7 4,733,841 - Echvi_3949 0.70 +1.3 4,733,854 + Echvi_3949 0.72 -0.1 4,733,929 + Echvi_3949 0.80 -1.4 4,733,931 + Echvi_3949 0.81 +0.5 4,733,932 - Echvi_3949 0.81 -1.3 4,733,932 - Echvi_3949 0.81 +0.5 4,733,932 - Echvi_3949 0.81 +2.1 4,733,932 - Echvi_3949 0.81 +0.5 4,733,932 - Echvi_3949 0.81 +0.1 4,733,932 - +1.1 4,733,932 - Echvi_3949 0.81 -2.7 4,733,960 + Echvi_3949 0.84 +0.5 4,733,960 + Echvi_3949 0.84 +0.1 4,733,970 - Echvi_3949 0.85 -0.0 4,733,983 + Echvi_3949 0.87 -1.5 4,734,042 - -0.3 4,734,042 - -0.8 4,734,079 - -1.7 4,734,079 - +0.0 4,734,117 + -0.5 4,734,143 + -0.1 4,734,155 + +1.1 4,734,155 + -0.4 4,734,156 - +0.2 4,734,171 - -1.4 4,734,171 - +0.6 4,734,253 + -0.6 4,734,253 + -0.5 4,734,253 + +0.1 4,734,253 + +0.4 4,734,253 + +0.1 4,734,254 - -0.7 4,734,254 - +0.3 4,734,372 + +0.3 4,734,373 - -0.6 4,734,386 + +0.1 4,734,436 + Echvi_3950 0.13 +1.3 4,734,436 + Echvi_3950 0.13 -0.5 4,734,437 - Echvi_3950 0.13 +0.3 4,734,517 + Echvi_3950 0.20 +1.4 4,734,518 - Echvi_3950 0.20 +0.8 4,734,520 + Echvi_3950 0.20 +1.2 4,734,520 + Echvi_3950 0.20 +1.5 4,734,521 - Echvi_3950 0.20 +2.7 4,734,521 - Echvi_3950 0.20 +1.5 4,734,521 - Echvi_3950 0.20 +0.8 4,734,529 - Echvi_3950 0.21 +0.2 4,734,560 + Echvi_3950 0.23 +0.0 4,734,565 - Echvi_3950 0.24 +1.0 4,734,656 + Echvi_3950 0.31 +0.5 4,734,680 + Echvi_3950 0.33 +0.4 4,734,699 - Echvi_3950 0.34 +0.5 4,734,700 + Echvi_3950 0.34 -1.0 4,734,825 + Echvi_3950 0.44 -1.0 4,734,826 - Echvi_3950 0.44 -0.4 4,734,866 + Echvi_3950 0.48 +1.4 4,734,866 + Echvi_3950 0.48 -1.0 4,734,867 - Echvi_3950 0.48 +1.4 4,734,867 - Echvi_3950 0.48 +1.8 4,734,867 - Echvi_3950 0.48 +0.7 4,734,957 + Echvi_3950 0.55 -1.4 4,734,999 - Echvi_3950 0.58 +2.0 4,735,004 + Echvi_3950 0.59 +0.6 4,735,123 - Echvi_3950 0.68 +0.6 4,735,166 - Echvi_3950 0.72 +0.5 4,735,181 - Echvi_3950 0.73 -0.1 4,735,181 - Echvi_3950 0.73 -0.4 4,735,188 - Echvi_3950 0.73 +1.3 4,735,202 - Echvi_3950 0.75 +0.7 4,735,293 - Echvi_3950 0.82 -0.1 4,735,294 + Echvi_3950 0.82 +0.4 4,735,367 + Echvi_3950 0.88 +0.8 4,735,367 + Echvi_3950 0.88 +1.7 4,735,368 - Echvi_3950 0.88 +1.1 4,735,468 + -1.5 4,735,486 - +0.5 4,735,486 - -0.6 4,735,520 + +1.3 4,735,520 + +1.1 4,735,521 - +1.1 4,735,521 - -1.7 4,735,628 + -1.4 4,735,632 + +0.2 4,735,690 + +1.1 4,735,691 - -0.9 4,735,691 - +0.3 4,735,718 + +2.2 4,735,723 + +0.4 4,735,723 + +0.2 4,735,724 - -1.7 4,735,771 + Echvi_3951 0.11 +1.7 4,735,771 + Echvi_3951 0.11 -0.6 4,735,826 - Echvi_3951 0.16 -0.4 4,735,826 - Echvi_3951 0.16 +0.8 4,735,860 + Echvi_3951 0.20 +0.6 4,736,043 - Echvi_3951 0.38 +0.3 4,736,043 - Echvi_3951 0.38 +0.9 4,736,044 + Echvi_3951 0.38 +1.1 4,736,085 - Echvi_3951 0.42 +1.3 4,736,261 + Echvi_3951 0.60 -0.5 4,736,262 - Echvi_3951 0.60 +0.9 4,736,282 + Echvi_3951 0.62 -1.9 4,736,282 + Echvi_3951 0.62 +2.1 4,736,282 + Echvi_3951 0.62 +0.7 4,736,283 - Echvi_3951 0.62 +0.3 4,736,283 - Echvi_3951 0.62 +0.1 4,736,334 + Echvi_3951 0.67 -0.2 4,736,387 + Echvi_3951 0.72 +0.3 4,736,428 + Echvi_3951 0.76 +1.1 4,736,429 - Echvi_3951 0.76 +0.5 4,736,489 + Echvi_3951 0.82 +0.8 4,736,489 + Echvi_3951 0.82 -0.5 4,736,489 + Echvi_3951 0.82 +0.5 4,736,489 + Echvi_3951 0.82 -0.4 4,736,489 + Echvi_3951 0.82 -0.4 4,736,489 + Echvi_3951 0.82 +1.1 4,736,490 - Echvi_3951 0.83 +1.3 4,736,490 - Echvi_3951 0.83 -0.0 4,736,490 - Echvi_3951 0.83 +1.0 4,736,490 - Echvi_3951 0.83 +0.1 4,736,490 - Echvi_3951 0.83 -0.5
Or see this region's nucleotide sequence