Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2816

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2814 and Echvi_2815 are separated by 120 nucleotidesEchvi_2815 and Echvi_2816 are separated by 82 nucleotidesEchvi_2816 and Echvi_2817 are separated by 54 nucleotides Echvi_2814: Echvi_2814 - Kef-type K+ transport systems, membrane components, at 3,369,581 to 3,371,572 _2814 Echvi_2815: Echvi_2815 - Predicted membrane protein, at 3,371,693 to 3,372,187 _2815 Echvi_2816: Echvi_2816 - Glycine/D-amino acid oxidases (deaminating), at 3,372,270 to 3,373,394 _2816 Echvi_2817: Echvi_2817 - Na+/H+ antiporter NhaC, at 3,373,449 to 3,374,930 _2817 Position (kb) 3372 3373 3374Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3371.289 kb on - strand, within Echvi_2814at 3371.303 kb on + strand, within Echvi_2814at 3371.395 kb on + strandat 3371.396 kb on - strandat 3371.414 kb on + strandat 3371.415 kb on - strandat 3371.480 kb on + strandat 3371.480 kb on + strandat 3371.498 kb on - strandat 3371.498 kb on - strandat 3371.501 kb on + strandat 3371.520 kb on - strandat 3371.520 kb on - strandat 3371.528 kb on + strandat 3371.528 kb on + strandat 3371.592 kb on - strandat 3371.595 kb on - strandat 3371.609 kb on - strandat 3371.610 kb on + strandat 3371.610 kb on + strandat 3371.672 kb on + strandat 3371.673 kb on - strandat 3371.716 kb on + strandat 3371.717 kb on - strandat 3371.717 kb on - strandat 3371.717 kb on - strandat 3371.718 kb on + strandat 3371.718 kb on + strandat 3371.720 kb on + strandat 3371.721 kb on - strandat 3371.808 kb on + strand, within Echvi_2815at 3371.808 kb on + strand, within Echvi_2815at 3371.884 kb on + strand, within Echvi_2815at 3371.885 kb on - strand, within Echvi_2815at 3371.900 kb on + strand, within Echvi_2815at 3371.919 kb on - strand, within Echvi_2815at 3371.955 kb on + strand, within Echvi_2815at 3371.955 kb on + strand, within Echvi_2815at 3371.955 kb on + strand, within Echvi_2815at 3371.956 kb on - strand, within Echvi_2815at 3371.956 kb on - strand, within Echvi_2815at 3371.975 kb on + strand, within Echvi_2815at 3371.975 kb on + strand, within Echvi_2815at 3371.981 kb on + strand, within Echvi_2815at 3371.982 kb on - strand, within Echvi_2815at 3372.023 kb on + strand, within Echvi_2815at 3372.024 kb on - strand, within Echvi_2815at 3372.024 kb on - strand, within Echvi_2815at 3372.055 kb on - strand, within Echvi_2815at 3372.055 kb on - strand, within Echvi_2815at 3372.065 kb on + strand, within Echvi_2815at 3372.134 kb on + strand, within Echvi_2815at 3372.142 kb on - strandat 3372.152 kb on + strandat 3372.170 kb on + strandat 3372.226 kb on + strandat 3372.260 kb on + strandat 3372.261 kb on - strandat 3372.261 kb on - strandat 3372.265 kb on + strandat 3372.266 kb on - strandat 3372.269 kb on + strandat 3372.269 kb on + strandat 3372.269 kb on + strandat 3372.270 kb on - strandat 3372.274 kb on + strandat 3372.274 kb on + strandat 3372.279 kb on + strandat 3372.280 kb on - strandat 3372.299 kb on + strandat 3372.306 kb on + strandat 3372.313 kb on + strandat 3372.314 kb on - strandat 3372.582 kb on + strand, within Echvi_2816at 3372.582 kb on + strand, within Echvi_2816at 3372.583 kb on - strand, within Echvi_2816at 3372.630 kb on + strand, within Echvi_2816at 3372.630 kb on + strand, within Echvi_2816at 3372.630 kb on + strand, within Echvi_2816at 3372.631 kb on - strand, within Echvi_2816at 3372.631 kb on - strand, within Echvi_2816at 3372.650 kb on + strand, within Echvi_2816at 3372.650 kb on + strand, within Echvi_2816at 3372.650 kb on + strand, within Echvi_2816at 3372.651 kb on - strand, within Echvi_2816at 3372.651 kb on - strand, within Echvi_2816at 3372.673 kb on + strand, within Echvi_2816at 3372.674 kb on - strand, within Echvi_2816at 3372.786 kb on + strand, within Echvi_2816at 3372.786 kb on + strand, within Echvi_2816at 3372.786 kb on + strand, within Echvi_2816at 3372.786 kb on + strand, within Echvi_2816at 3372.787 kb on - strand, within Echvi_2816at 3372.787 kb on - strand, within Echvi_2816at 3372.788 kb on + strand, within Echvi_2816at 3372.820 kb on + strand, within Echvi_2816at 3372.821 kb on - strand, within Echvi_2816at 3372.894 kb on + strand, within Echvi_2816at 3372.895 kb on - strand, within Echvi_2816at 3372.895 kb on - strand, within Echvi_2816at 3372.898 kb on - strand, within Echvi_2816at 3372.898 kb on - strand, within Echvi_2816at 3372.954 kb on - strand, within Echvi_2816at 3372.985 kb on - strand, within Echvi_2816at 3372.986 kb on + strand, within Echvi_2816at 3373.025 kb on + strand, within Echvi_2816at 3373.028 kb on + strand, within Echvi_2816at 3373.049 kb on + strand, within Echvi_2816at 3373.050 kb on - strand, within Echvi_2816at 3373.072 kb on - strand, within Echvi_2816at 3373.163 kb on - strand, within Echvi_2816at 3373.175 kb on + strand, within Echvi_2816at 3373.208 kb on + strand, within Echvi_2816at 3373.283 kb on + strandat 3373.289 kb on - strandat 3373.377 kb on - strandat 3373.384 kb on + strandat 3373.444 kb on + strandat 3373.507 kb on + strandat 3373.512 kb on - strandat 3373.747 kb on + strand, within Echvi_2817at 3373.761 kb on + strand, within Echvi_2817at 3373.816 kb on + strand, within Echvi_2817at 3373.817 kb on - strand, within Echvi_2817at 3373.838 kb on + strand, within Echvi_2817at 3373.876 kb on + strand, within Echvi_2817at 3373.876 kb on + strand, within Echvi_2817at 3373.876 kb on + strand, within Echvi_2817at 3373.877 kb on - strand, within Echvi_2817at 3373.882 kb on + strand, within Echvi_2817at 3373.938 kb on - strand, within Echvi_2817at 3373.938 kb on - strand, within Echvi_2817at 3373.939 kb on + strand, within Echvi_2817at 3373.951 kb on - strand, within Echvi_2817at 3373.961 kb on + strand, within Echvi_2817at 3374.073 kb on - strand, within Echvi_2817at 3374.077 kb on + strand, within Echvi_2817at 3374.078 kb on - strand, within Echvi_2817at 3374.078 kb on - strand, within Echvi_2817at 3374.078 kb on - strand, within Echvi_2817at 3374.083 kb on + strand, within Echvi_2817at 3374.083 kb on + strand, within Echvi_2817at 3374.189 kb on + strand, within Echvi_2817at 3374.312 kb on + strand, within Echvi_2817at 3374.312 kb on + strand, within Echvi_2817at 3374.337 kb on + strand, within Echvi_2817at 3374.337 kb on + strand, within Echvi_2817at 3374.337 kb on + strand, within Echvi_2817at 3374.337 kb on + strand, within Echvi_2817at 3374.338 kb on - strand, within Echvi_2817at 3374.339 kb on + strand, within Echvi_2817at 3374.339 kb on + strand, within Echvi_2817at 3374.339 kb on + strand, within Echvi_2817at 3374.339 kb on + strand, within Echvi_2817at 3374.339 kb on + strand, within Echvi_2817at 3374.339 kb on + strand, within Echvi_2817at 3374.339 kb on + strand, within Echvi_2817at 3374.339 kb on + strand, within Echvi_2817at 3374.340 kb on - strand, within Echvi_2817at 3374.340 kb on - strand, within Echvi_2817at 3374.340 kb on - strand, within Echvi_2817at 3374.340 kb on - strand, within Echvi_2817at 3374.343 kb on + strand, within Echvi_2817at 3374.343 kb on + strand, within Echvi_2817at 3374.343 kb on + strand, within Echvi_2817at 3374.343 kb on + strand, within Echvi_2817at 3374.343 kb on + strand, within Echvi_2817at 3374.344 kb on - strand, within Echvi_2817at 3374.344 kb on - strand, within Echvi_2817at 3374.344 kb on - strand, within Echvi_2817

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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3,371,289 - Echvi_2814 0.86 +1.2
3,371,303 + Echvi_2814 0.86 +0.1
3,371,395 + +0.8
3,371,396 - -0.0
3,371,414 + -0.3
3,371,415 - -1.0
3,371,480 + +0.3
3,371,480 + -1.5
3,371,498 - -1.9
3,371,498 - -0.1
3,371,501 + -0.2
3,371,520 - -1.6
3,371,520 - -0.4
3,371,528 + -2.2
3,371,528 + -1.2
3,371,592 - +0.2
3,371,595 - -0.1
3,371,609 - -0.3
3,371,610 + +0.5
3,371,610 + +1.0
3,371,672 + -0.1
3,371,673 - -1.4
3,371,716 + -0.7
3,371,717 - -1.3
3,371,717 - -0.3
3,371,717 - +0.7
3,371,718 + -1.0
3,371,718 + -0.1
3,371,720 + -0.2
3,371,721 - -1.2
3,371,808 + Echvi_2815 0.23 -0.4
3,371,808 + Echvi_2815 0.23 +1.8
3,371,884 + Echvi_2815 0.39 +0.7
3,371,885 - Echvi_2815 0.39 +1.2
3,371,900 + Echvi_2815 0.42 -0.1
3,371,919 - Echvi_2815 0.46 +2.2
3,371,955 + Echvi_2815 0.53 -1.0
3,371,955 + Echvi_2815 0.53 -1.5
3,371,955 + Echvi_2815 0.53 +1.2
3,371,956 - Echvi_2815 0.53 +0.2
3,371,956 - Echvi_2815 0.53 +0.7
3,371,975 + Echvi_2815 0.57 +0.9
3,371,975 + Echvi_2815 0.57 +0.5
3,371,981 + Echvi_2815 0.58 +0.9
3,371,982 - Echvi_2815 0.58 +0.7
3,372,023 + Echvi_2815 0.67 -0.0
3,372,024 - Echvi_2815 0.67 -0.6
3,372,024 - Echvi_2815 0.67 +0.8
3,372,055 - Echvi_2815 0.73 -0.4
3,372,055 - Echvi_2815 0.73 +0.2
3,372,065 + Echvi_2815 0.75 -1.2
3,372,134 + Echvi_2815 0.89 -0.8
3,372,142 - +0.6
3,372,152 + +0.7
3,372,170 + +1.5
3,372,226 + +0.4
3,372,260 + -0.2
3,372,261 - +0.5
3,372,261 - -0.4
3,372,265 + -0.6
3,372,266 - +1.8
3,372,269 + +2.3
3,372,269 + +1.6
3,372,269 + -0.7
3,372,270 - -0.2
3,372,274 + -1.4
3,372,274 + +0.1
3,372,279 + -0.2
3,372,280 - +0.2
3,372,299 + +0.2
3,372,306 + +0.3
3,372,313 + +0.1
3,372,314 - -2.2
3,372,582 + Echvi_2816 0.28 -0.2
3,372,582 + Echvi_2816 0.28 -1.5
3,372,583 - Echvi_2816 0.28 +0.8
3,372,630 + Echvi_2816 0.32 +1.0
3,372,630 + Echvi_2816 0.32 +1.2
3,372,630 + Echvi_2816 0.32 -0.4
3,372,631 - Echvi_2816 0.32 +1.6
3,372,631 - Echvi_2816 0.32 +1.3
3,372,650 + Echvi_2816 0.34 +1.8
3,372,650 + Echvi_2816 0.34 +0.6
3,372,650 + Echvi_2816 0.34 +0.1
3,372,651 - Echvi_2816 0.34 -0.1
3,372,651 - Echvi_2816 0.34 +0.0
3,372,673 + Echvi_2816 0.36 +0.8
3,372,674 - Echvi_2816 0.36 +0.5
3,372,786 + Echvi_2816 0.46 -1.0
3,372,786 + Echvi_2816 0.46 +1.2
3,372,786 + Echvi_2816 0.46 +1.4
3,372,786 + Echvi_2816 0.46 -0.8
3,372,787 - Echvi_2816 0.46 +1.4
3,372,787 - Echvi_2816 0.46 +0.3
3,372,788 + Echvi_2816 0.46 +0.5
3,372,820 + Echvi_2816 0.49 -0.1
3,372,821 - Echvi_2816 0.49 +2.1
3,372,894 + Echvi_2816 0.55 -0.7
3,372,895 - Echvi_2816 0.56 +0.5
3,372,895 - Echvi_2816 0.56 +1.1
3,372,898 - Echvi_2816 0.56 -1.6
3,372,898 - Echvi_2816 0.56 +0.2
3,372,954 - Echvi_2816 0.61 -0.6
3,372,985 - Echvi_2816 0.64 +2.4
3,372,986 + Echvi_2816 0.64 -0.0
3,373,025 + Echvi_2816 0.67 +0.5
3,373,028 + Echvi_2816 0.67 -0.7
3,373,049 + Echvi_2816 0.69 +0.6
3,373,050 - Echvi_2816 0.69 +1.1
3,373,072 - Echvi_2816 0.71 +2.5
3,373,163 - Echvi_2816 0.79 +0.7
3,373,175 + Echvi_2816 0.80 +0.3
3,373,208 + Echvi_2816 0.83 -1.6
3,373,283 + -1.2
3,373,289 - -1.0
3,373,377 - +0.2
3,373,384 + +1.8
3,373,444 + -0.4
3,373,507 + +0.1
3,373,512 - +2.4
3,373,747 + Echvi_2817 0.20 +2.6
3,373,761 + Echvi_2817 0.21 -0.9
3,373,816 + Echvi_2817 0.25 +0.9
3,373,817 - Echvi_2817 0.25 -0.5
3,373,838 + Echvi_2817 0.26 +1.2
3,373,876 + Echvi_2817 0.29 +1.5
3,373,876 + Echvi_2817 0.29 +1.7
3,373,876 + Echvi_2817 0.29 +1.2
3,373,877 - Echvi_2817 0.29 -0.5
3,373,882 + Echvi_2817 0.29 +1.5
3,373,938 - Echvi_2817 0.33 +0.7
3,373,938 - Echvi_2817 0.33 -0.2
3,373,939 + Echvi_2817 0.33 -0.2
3,373,951 - Echvi_2817 0.34 -0.2
3,373,961 + Echvi_2817 0.35 -1.5
3,374,073 - Echvi_2817 0.42 +0.8
3,374,077 + Echvi_2817 0.42 -0.0
3,374,078 - Echvi_2817 0.42 +1.6
3,374,078 - Echvi_2817 0.42 -1.0
3,374,078 - Echvi_2817 0.42 +0.2
3,374,083 + Echvi_2817 0.43 +2.4
3,374,083 + Echvi_2817 0.43 +1.6
3,374,189 + Echvi_2817 0.50 +2.2
3,374,312 + Echvi_2817 0.58 +2.1
3,374,312 + Echvi_2817 0.58 +2.0
3,374,337 + Echvi_2817 0.60 +1.7
3,374,337 + Echvi_2817 0.60 +0.8
3,374,337 + Echvi_2817 0.60 +0.8
3,374,337 + Echvi_2817 0.60 +0.8
3,374,338 - Echvi_2817 0.60 -0.4
3,374,339 + Echvi_2817 0.60 +1.1
3,374,339 + Echvi_2817 0.60 +0.7
3,374,339 + Echvi_2817 0.60 -0.2
3,374,339 + Echvi_2817 0.60 -0.9
3,374,339 + Echvi_2817 0.60 -0.4
3,374,339 + Echvi_2817 0.60 +2.7
3,374,339 + Echvi_2817 0.60 +2.8
3,374,339 + Echvi_2817 0.60 +0.9
3,374,340 - Echvi_2817 0.60 -1.0
3,374,340 - Echvi_2817 0.60 +1.7
3,374,340 - Echvi_2817 0.60 -2.1
3,374,340 - Echvi_2817 0.60 -2.0
3,374,343 + Echvi_2817 0.60 +0.9
3,374,343 + Echvi_2817 0.60 +1.0
3,374,343 + Echvi_2817 0.60 +0.6
3,374,343 + Echvi_2817 0.60 +1.1
3,374,343 + Echvi_2817 0.60 +0.4
3,374,344 - Echvi_2817 0.60 +0.2
3,374,344 - Echvi_2817 0.60 -0.2
3,374,344 - Echvi_2817 0.60 +0.9

Or see this region's nucleotide sequence