Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2808

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2807 and Echvi_2808 are separated by 181 nucleotidesEchvi_2808 and Echvi_2809 are separated by 12 nucleotides Echvi_2807: Echvi_2807 - Beta-fructosidases (levanase/invertase), at 3,354,295 to 3,355,941 _2807 Echvi_2808: Echvi_2808 - SusD family., at 3,356,123 to 3,357,865 _2808 Echvi_2809: Echvi_2809 - TonB-linked outer membrane protein, SusC/RagA family, at 3,357,878 to 3,360,997 _2809 Position (kb) 3356 3357 3358Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3355.226 kb on + strand, within Echvi_2807at 3355.227 kb on - strand, within Echvi_2807at 3355.233 kb on + strand, within Echvi_2807at 3355.259 kb on + strand, within Echvi_2807at 3355.259 kb on + strand, within Echvi_2807at 3355.299 kb on + strand, within Echvi_2807at 3355.301 kb on + strand, within Echvi_2807at 3355.302 kb on - strand, within Echvi_2807at 3355.360 kb on + strand, within Echvi_2807at 3355.360 kb on + strand, within Echvi_2807at 3355.361 kb on - strand, within Echvi_2807at 3355.444 kb on - strand, within Echvi_2807at 3355.448 kb on - strand, within Echvi_2807at 3355.448 kb on - strand, within Echvi_2807at 3355.448 kb on - strand, within Echvi_2807at 3355.448 kb on - strand, within Echvi_2807at 3355.448 kb on - strand, within Echvi_2807at 3355.508 kb on - strand, within Echvi_2807at 3355.526 kb on + strand, within Echvi_2807at 3355.526 kb on + strand, within Echvi_2807at 3355.529 kb on + strand, within Echvi_2807at 3355.535 kb on - strand, within Echvi_2807at 3355.570 kb on - strand, within Echvi_2807at 3355.572 kb on + strand, within Echvi_2807at 3355.604 kb on + strand, within Echvi_2807at 3355.673 kb on + strand, within Echvi_2807at 3355.674 kb on - strand, within Echvi_2807at 3355.696 kb on + strand, within Echvi_2807at 3355.699 kb on + strand, within Echvi_2807at 3355.900 kb on + strandat 3355.915 kb on + strandat 3355.915 kb on + strandat 3355.916 kb on - strandat 3355.916 kb on - strandat 3355.973 kb on - strandat 3355.987 kb on + strandat 3356.033 kb on + strandat 3356.050 kb on - strandat 3356.118 kb on - strandat 3356.124 kb on + strandat 3356.128 kb on - strandat 3356.146 kb on - strandat 3356.148 kb on - strandat 3356.159 kb on - strandat 3356.187 kb on + strandat 3356.190 kb on + strandat 3356.259 kb on + strandat 3356.259 kb on + strandat 3356.264 kb on - strandat 3356.293 kb on + strandat 3356.293 kb on + strandat 3356.367 kb on + strand, within Echvi_2808at 3356.391 kb on + strand, within Echvi_2808at 3356.391 kb on + strand, within Echvi_2808at 3356.392 kb on - strand, within Echvi_2808at 3356.393 kb on + strand, within Echvi_2808at 3356.393 kb on + strand, within Echvi_2808at 3356.406 kb on + strand, within Echvi_2808at 3356.429 kb on + strand, within Echvi_2808at 3356.429 kb on + strand, within Echvi_2808at 3356.430 kb on - strand, within Echvi_2808at 3356.581 kb on + strand, within Echvi_2808at 3356.601 kb on + strand, within Echvi_2808at 3356.601 kb on + strand, within Echvi_2808at 3356.602 kb on - strand, within Echvi_2808at 3356.646 kb on + strand, within Echvi_2808at 3356.646 kb on + strand, within Echvi_2808at 3356.646 kb on + strand, within Echvi_2808at 3356.646 kb on + strand, within Echvi_2808at 3356.647 kb on - strand, within Echvi_2808at 3356.652 kb on + strand, within Echvi_2808at 3356.652 kb on + strand, within Echvi_2808at 3356.652 kb on + strand, within Echvi_2808at 3356.653 kb on - strand, within Echvi_2808at 3356.653 kb on - strand, within Echvi_2808at 3356.653 kb on - strand, within Echvi_2808at 3356.653 kb on - strand, within Echvi_2808at 3356.653 kb on - strand, within Echvi_2808at 3356.653 kb on - strand, within Echvi_2808at 3356.654 kb on + strand, within Echvi_2808at 3356.685 kb on + strand, within Echvi_2808at 3356.686 kb on - strand, within Echvi_2808at 3356.692 kb on + strand, within Echvi_2808at 3356.705 kb on - strand, within Echvi_2808at 3356.709 kb on - strand, within Echvi_2808at 3356.713 kb on + strand, within Echvi_2808at 3356.713 kb on + strand, within Echvi_2808at 3356.721 kb on + strand, within Echvi_2808at 3356.813 kb on + strand, within Echvi_2808at 3356.813 kb on + strand, within Echvi_2808at 3356.813 kb on + strand, within Echvi_2808at 3356.813 kb on + strand, within Echvi_2808at 3356.813 kb on + strand, within Echvi_2808at 3356.814 kb on - strand, within Echvi_2808at 3356.814 kb on - strand, within Echvi_2808at 3356.814 kb on - strand, within Echvi_2808at 3356.827 kb on + strand, within Echvi_2808at 3356.907 kb on - strand, within Echvi_2808at 3356.928 kb on + strand, within Echvi_2808at 3356.933 kb on + strand, within Echvi_2808at 3356.933 kb on + strand, within Echvi_2808at 3356.933 kb on + strand, within Echvi_2808at 3356.933 kb on + strand, within Echvi_2808at 3356.933 kb on + strand, within Echvi_2808at 3356.934 kb on - strand, within Echvi_2808at 3356.934 kb on - strand, within Echvi_2808at 3356.939 kb on - strand, within Echvi_2808at 3356.967 kb on + strandat 3356.967 kb on + strand, within Echvi_2808at 3356.968 kb on - strand, within Echvi_2808at 3356.990 kb on - strand, within Echvi_2808at 3357.021 kb on - strand, within Echvi_2808at 3357.082 kb on + strand, within Echvi_2808at 3357.090 kb on - strand, within Echvi_2808at 3357.103 kb on - strand, within Echvi_2808at 3357.141 kb on - strand, within Echvi_2808at 3357.143 kb on + strand, within Echvi_2808at 3357.143 kb on + strand, within Echvi_2808at 3357.168 kb on + strand, within Echvi_2808at 3357.169 kb on - strand, within Echvi_2808at 3357.178 kb on - strand, within Echvi_2808at 3357.199 kb on - strand, within Echvi_2808at 3357.269 kb on + strand, within Echvi_2808at 3357.270 kb on - strand, within Echvi_2808at 3357.284 kb on + strand, within Echvi_2808at 3357.311 kb on + strand, within Echvi_2808at 3357.311 kb on + strand, within Echvi_2808at 3357.312 kb on - strand, within Echvi_2808at 3357.364 kb on - strand, within Echvi_2808at 3357.389 kb on - strand, within Echvi_2808at 3357.414 kb on - strand, within Echvi_2808at 3357.479 kb on + strand, within Echvi_2808at 3357.517 kb on - strand, within Echvi_2808at 3357.544 kb on + strand, within Echvi_2808at 3357.565 kb on + strand, within Echvi_2808at 3357.566 kb on - strand, within Echvi_2808at 3357.566 kb on - strand, within Echvi_2808at 3357.568 kb on + strand, within Echvi_2808at 3357.569 kb on - strand, within Echvi_2808at 3357.569 kb on - strand, within Echvi_2808at 3357.569 kb on - strand, within Echvi_2808at 3357.569 kb on - strand, within Echvi_2808at 3357.574 kb on + strand, within Echvi_2808at 3357.575 kb on - strand, within Echvi_2808at 3357.575 kb on - strand, within Echvi_2808at 3357.575 kb on - strand, within Echvi_2808at 3357.575 kb on - strand, within Echvi_2808at 3357.575 kb on - strand, within Echvi_2808at 3357.576 kb on + strand, within Echvi_2808at 3357.577 kb on - strand, within Echvi_2808at 3357.577 kb on - strand, within Echvi_2808at 3357.630 kb on + strand, within Echvi_2808at 3357.630 kb on + strand, within Echvi_2808at 3357.631 kb on - strand, within Echvi_2808at 3357.647 kb on + strand, within Echvi_2808at 3357.648 kb on - strand, within Echvi_2808at 3357.740 kb on - strandat 3357.822 kb on - strandat 3357.822 kb on - strandat 3357.822 kb on - strandat 3357.822 kb on - strandat 3357.845 kb on - strandat 3357.845 kb on - strandat 3357.845 kb on - strandat 3357.847 kb on - strandat 3357.847 kb on - strandat 3357.849 kb on - strandat 3357.849 kb on - strandat 3357.853 kb on + strandat 3357.853 kb on + strandat 3357.856 kb on - strandat 3357.899 kb on + strandat 3357.899 kb on + strandat 3357.940 kb on + strandat 3357.940 kb on + strandat 3357.964 kb on - strandat 3357.983 kb on + strandat 3358.005 kb on + strandat 3358.093 kb on - strandat 3358.106 kb on - strandat 3358.135 kb on + strandat 3358.247 kb on - strand, within Echvi_2809at 3358.249 kb on - strand, within Echvi_2809at 3358.323 kb on - strand, within Echvi_2809at 3358.565 kb on + strand, within Echvi_2809at 3358.582 kb on - strand, within Echvi_2809at 3358.631 kb on + strand, within Echvi_2809at 3358.640 kb on - strand, within Echvi_2809at 3358.691 kb on - strand, within Echvi_2809at 3358.753 kb on + strand, within Echvi_2809at 3358.760 kb on - strand, within Echvi_2809at 3358.760 kb on - strand, within Echvi_2809at 3358.782 kb on + strand, within Echvi_2809at 3358.810 kb on + strand, within Echvi_2809at 3358.810 kb on + strand, within Echvi_2809at 3358.863 kb on - strand, within Echvi_2809

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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3,355,226 + Echvi_2807 0.57 -2.6
3,355,227 - Echvi_2807 0.57 +1.7
3,355,233 + Echvi_2807 0.57 +0.2
3,355,259 + Echvi_2807 0.59 +0.7
3,355,259 + Echvi_2807 0.59 -0.8
3,355,299 + Echvi_2807 0.61 +0.8
3,355,301 + Echvi_2807 0.61 +0.5
3,355,302 - Echvi_2807 0.61 +0.4
3,355,360 + Echvi_2807 0.65 +0.1
3,355,360 + Echvi_2807 0.65 +0.4
3,355,361 - Echvi_2807 0.65 +1.4
3,355,444 - Echvi_2807 0.70 +1.9
3,355,448 - Echvi_2807 0.70 +0.7
3,355,448 - Echvi_2807 0.70 +2.8
3,355,448 - Echvi_2807 0.70 +1.1
3,355,448 - Echvi_2807 0.70 +1.5
3,355,448 - Echvi_2807 0.70 -1.1
3,355,508 - Echvi_2807 0.74 -0.3
3,355,526 + Echvi_2807 0.75 -1.3
3,355,526 + Echvi_2807 0.75 -2.0
3,355,529 + Echvi_2807 0.75 -2.0
3,355,535 - Echvi_2807 0.75 +1.1
3,355,570 - Echvi_2807 0.77 +0.9
3,355,572 + Echvi_2807 0.78 +0.6
3,355,604 + Echvi_2807 0.79 +1.5
3,355,673 + Echvi_2807 0.84 +0.1
3,355,674 - Echvi_2807 0.84 -1.3
3,355,696 + Echvi_2807 0.85 +0.5
3,355,699 + Echvi_2807 0.85 +0.2
3,355,900 + -0.5
3,355,915 + -1.0
3,355,915 + +1.2
3,355,916 - +0.2
3,355,916 - +0.5
3,355,973 - +2.8
3,355,987 + -1.0
3,356,033 + +0.8
3,356,050 - +2.4
3,356,118 - +2.8
3,356,124 + +0.1
3,356,128 - +3.1
3,356,146 - +2.9
3,356,148 - +3.3
3,356,159 - +3.6
3,356,187 + -0.4
3,356,190 + +0.5
3,356,259 + +0.7
3,356,259 + -0.2
3,356,264 - +2.6
3,356,293 + -0.8
3,356,293 + +0.5
3,356,367 + Echvi_2808 0.14 -0.4
3,356,391 + Echvi_2808 0.15 -0.8
3,356,391 + Echvi_2808 0.15 -0.0
3,356,392 - Echvi_2808 0.15 +3.8
3,356,393 + Echvi_2808 0.15 -1.0
3,356,393 + Echvi_2808 0.15 -1.4
3,356,406 + Echvi_2808 0.16 -1.7
3,356,429 + Echvi_2808 0.18 -0.2
3,356,429 + Echvi_2808 0.18 -1.4
3,356,430 - Echvi_2808 0.18 +2.5
3,356,581 + Echvi_2808 0.26 +0.5
3,356,601 + Echvi_2808 0.27 +0.7
3,356,601 + Echvi_2808 0.27 +2.2
3,356,602 - Echvi_2808 0.27 +1.8
3,356,646 + Echvi_2808 0.30 -1.0
3,356,646 + Echvi_2808 0.30 +1.8
3,356,646 + Echvi_2808 0.30 +0.3
3,356,646 + Echvi_2808 0.30 -1.7
3,356,647 - Echvi_2808 0.30 +1.7
3,356,652 + Echvi_2808 0.30 +0.1
3,356,652 + Echvi_2808 0.30 -0.7
3,356,652 + Echvi_2808 0.30 -1.5
3,356,653 - Echvi_2808 0.30 +2.4
3,356,653 - Echvi_2808 0.30 +2.8
3,356,653 - Echvi_2808 0.30 +2.7
3,356,653 - Echvi_2808 0.30 +3.0
3,356,653 - Echvi_2808 0.30 +3.3
3,356,653 - Echvi_2808 0.30 +2.6
3,356,654 + Echvi_2808 0.30 -0.0
3,356,685 + Echvi_2808 0.32 -1.8
3,356,686 - Echvi_2808 0.32 +2.1
3,356,692 + Echvi_2808 0.33 +0.4
3,356,705 - Echvi_2808 0.33 -1.0
3,356,709 - Echvi_2808 0.34 +2.6
3,356,713 + Echvi_2808 0.34 -0.0
3,356,713 + Echvi_2808 0.34 -0.8
3,356,721 + Echvi_2808 0.34 -0.0
3,356,813 + Echvi_2808 0.40 -0.0
3,356,813 + Echvi_2808 0.40 +0.8
3,356,813 + Echvi_2808 0.40 +0.2
3,356,813 + Echvi_2808 0.40 +0.5
3,356,813 + Echvi_2808 0.40 +0.8
3,356,814 - Echvi_2808 0.40 +1.2
3,356,814 - Echvi_2808 0.40 +3.9
3,356,814 - Echvi_2808 0.40 +2.8
3,356,827 + Echvi_2808 0.40 -0.6
3,356,907 - Echvi_2808 0.45 +1.8
3,356,928 + Echvi_2808 0.46 +0.0
3,356,933 + Echvi_2808 0.46 -2.4
3,356,933 + Echvi_2808 0.46 -0.2
3,356,933 + Echvi_2808 0.46 -1.3
3,356,933 + Echvi_2808 0.46 -1.0
3,356,933 + Echvi_2808 0.46 -0.7
3,356,934 - Echvi_2808 0.47 +2.4
3,356,934 - Echvi_2808 0.47 +3.2
3,356,939 - Echvi_2808 0.47 +1.7
3,356,967 + +0.8
3,356,967 + Echvi_2808 0.48 -0.3
3,356,968 - Echvi_2808 0.48 +1.9
3,356,990 - Echvi_2808 0.50 +2.3
3,357,021 - Echvi_2808 0.52 +3.4
3,357,082 + Echvi_2808 0.55 +0.5
3,357,090 - Echvi_2808 0.55 +2.3
3,357,103 - Echvi_2808 0.56 +0.4
3,357,141 - Echvi_2808 0.58 +2.9
3,357,143 + Echvi_2808 0.59 -0.2
3,357,143 + Echvi_2808 0.59 -1.4
3,357,168 + Echvi_2808 0.60 +1.0
3,357,169 - Echvi_2808 0.60 +0.2
3,357,178 - Echvi_2808 0.61 +2.8
3,357,199 - Echvi_2808 0.62 +2.0
3,357,269 + Echvi_2808 0.66 +0.3
3,357,270 - Echvi_2808 0.66 +2.8
3,357,284 + Echvi_2808 0.67 +1.4
3,357,311 + Echvi_2808 0.68 -0.7
3,357,311 + Echvi_2808 0.68 -1.6
3,357,312 - Echvi_2808 0.68 +2.8
3,357,364 - Echvi_2808 0.71 +1.2
3,357,389 - Echvi_2808 0.73 +0.8
3,357,414 - Echvi_2808 0.74 +1.4
3,357,479 + Echvi_2808 0.78 +1.0
3,357,517 - Echvi_2808 0.80 +1.7
3,357,544 + Echvi_2808 0.82 -2.1
3,357,565 + Echvi_2808 0.83 -0.2
3,357,566 - Echvi_2808 0.83 +1.1
3,357,566 - Echvi_2808 0.83 +0.9
3,357,568 + Echvi_2808 0.83 -1.8
3,357,569 - Echvi_2808 0.83 +1.7
3,357,569 - Echvi_2808 0.83 +0.5
3,357,569 - Echvi_2808 0.83 +1.2
3,357,569 - Echvi_2808 0.83 +1.6
3,357,574 + Echvi_2808 0.83 -1.5
3,357,575 - Echvi_2808 0.83 +1.6
3,357,575 - Echvi_2808 0.83 +2.4
3,357,575 - Echvi_2808 0.83 +1.8
3,357,575 - Echvi_2808 0.83 +1.6
3,357,575 - Echvi_2808 0.83 +1.3
3,357,576 + Echvi_2808 0.83 +3.1
3,357,577 - Echvi_2808 0.83 +0.3
3,357,577 - Echvi_2808 0.83 +1.5
3,357,630 + Echvi_2808 0.86 -0.9
3,357,630 + Echvi_2808 0.86 +0.5
3,357,631 - Echvi_2808 0.87 +4.4
3,357,647 + Echvi_2808 0.87 -0.2
3,357,648 - Echvi_2808 0.87 +2.4
3,357,740 - +2.0
3,357,822 - +2.2
3,357,822 - +0.8
3,357,822 - +1.8
3,357,822 - +1.4
3,357,845 - +1.5
3,357,845 - +1.6
3,357,845 - +1.8
3,357,847 - +0.4
3,357,847 - +1.9
3,357,849 - +4.5
3,357,849 - -0.4
3,357,853 + +0.2
3,357,853 + -2.0
3,357,856 - +0.3
3,357,899 + +1.3
3,357,899 + -2.0
3,357,940 + -1.2
3,357,940 + +0.2
3,357,964 - +2.3
3,357,983 + +2.4
3,358,005 + -0.4
3,358,093 - +2.7
3,358,106 - +0.8
3,358,135 + +1.2
3,358,247 - Echvi_2809 0.12 +2.5
3,358,249 - Echvi_2809 0.12 -0.8
3,358,323 - Echvi_2809 0.14 +2.5
3,358,565 + Echvi_2809 0.22 -1.8
3,358,582 - Echvi_2809 0.23 -0.8
3,358,631 + Echvi_2809 0.24 -0.5
3,358,640 - Echvi_2809 0.24 +1.6
3,358,691 - Echvi_2809 0.26 +1.2
3,358,753 + Echvi_2809 0.28 +1.3
3,358,760 - Echvi_2809 0.28 +0.4
3,358,760 - Echvi_2809 0.28 -0.1
3,358,782 + Echvi_2809 0.29 -0.2
3,358,810 + Echvi_2809 0.30 -2.8
3,358,810 + Echvi_2809 0.30 +0.9
3,358,863 - Echvi_2809 0.32 +0.9

Or see this region's nucleotide sequence