Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2408 and Echvi_2409 are separated by 255 nucleotides Echvi_2409 and Echvi_2410 overlap by 1 nucleotides Echvi_2410 and Echvi_2411 are separated by 116 nucleotides Echvi_2411 and Echvi_2412 are separated by 573 nucleotides
Echvi_2408: Echvi_2408 - Nucleotidyltransferase/DNA polymerase involved in DNA repair, at 2,850,978 to 2,852,174
_2408
Echvi_2409: Echvi_2409 - Acetyltransferases, at 2,852,430 to 2,852,891
_2409
Echvi_2410: Echvi_2410 - Acetyltransferases, at 2,852,891 to 2,853,343
_2410
Echvi_2411: Echvi_2411 - tRNA, at 2,853,460 to 2,853,545
_2411
Echvi_2412: Echvi_2412 - Beta-glucosidase-related glycosidases, at 2,854,119 to 2,856,518
_2412
Position (kb)
2852
2853
2854 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2852.026 kb on + strand, within Echvi_2408 at 2852.027 kb on - strand, within Echvi_2408 at 2852.088 kb on - strand at 2852.175 kb on - strand at 2852.182 kb on - strand at 2852.187 kb on - strand at 2852.226 kb on + strand at 2852.226 kb on + strand at 2852.226 kb on + strand at 2852.250 kb on + strand at 2852.250 kb on + strand at 2852.251 kb on - strand at 2852.310 kb on + strand at 2852.338 kb on + strand at 2852.356 kb on + strand at 2852.357 kb on - strand at 2852.357 kb on - strand at 2852.359 kb on + strand at 2852.359 kb on + strand at 2852.370 kb on + strand at 2852.378 kb on + strand at 2852.378 kb on + strand at 2852.427 kb on + strand at 2852.427 kb on + strand at 2852.429 kb on + strand at 2852.429 kb on + strand at 2852.438 kb on + strand at 2852.445 kb on - strand at 2852.456 kb on + strand at 2852.534 kb on + strand, within Echvi_2409 at 2852.536 kb on + strand, within Echvi_2409 at 2852.617 kb on + strand, within Echvi_2409 at 2852.618 kb on - strand, within Echvi_2409 at 2852.704 kb on + strand, within Echvi_2409 at 2852.704 kb on + strand, within Echvi_2409 at 2852.704 kb on + strand, within Echvi_2409 at 2852.705 kb on - strand, within Echvi_2409 at 2852.705 kb on - strand, within Echvi_2409 at 2852.705 kb on - strand, within Echvi_2409 at 2852.772 kb on + strand, within Echvi_2409 at 2852.772 kb on + strand, within Echvi_2409 at 2852.773 kb on - strand, within Echvi_2409 at 2852.775 kb on - strand, within Echvi_2409 at 2852.804 kb on + strand, within Echvi_2409 at 2852.804 kb on + strand, within Echvi_2409 at 2852.804 kb on + strand, within Echvi_2409 at 2852.804 kb on + strand, within Echvi_2409 at 2852.804 kb on + strand, within Echvi_2409 at 2852.804 kb on + strand, within Echvi_2409 at 2852.805 kb on - strand, within Echvi_2409 at 2852.805 kb on - strand, within Echvi_2409 at 2852.805 kb on - strand, within Echvi_2409 at 2852.805 kb on - strand, within Echvi_2409 at 2852.805 kb on - strand, within Echvi_2409 at 2852.808 kb on + strand, within Echvi_2409 at 2852.809 kb on - strand, within Echvi_2409 at 2852.853 kb on + strand at 2852.870 kb on + strand at 2852.881 kb on + strand at 2853.002 kb on + strand, within Echvi_2410 at 2853.003 kb on - strand, within Echvi_2410 at 2853.003 kb on - strand, within Echvi_2410 at 2853.023 kb on - strand, within Echvi_2410 at 2853.074 kb on - strand, within Echvi_2410 at 2853.083 kb on + strand, within Echvi_2410 at 2853.108 kb on - strand, within Echvi_2410 at 2853.174 kb on + strand, within Echvi_2410 at 2853.175 kb on - strand, within Echvi_2410 at 2853.342 kb on - strand at 2853.373 kb on + strand at 2853.374 kb on - strand at 2853.663 kb on + strand at 2853.664 kb on - strand at 2853.672 kb on + strand at 2853.673 kb on - strand at 2853.720 kb on - strand at 2853.772 kb on + strand at 2853.840 kb on - strand at 2853.934 kb on + strand at 2854.093 kb on + strand at 2854.094 kb on - strand at 2854.118 kb on + strand at 2854.118 kb on + strand at 2854.118 kb on + strand at 2854.119 kb on - strand at 2854.156 kb on - strand at 2854.172 kb on + strand at 2854.173 kb on - strand at 2854.173 kb on - strand at 2854.173 kb on - strand at 2854.227 kb on + strand at 2854.313 kb on + strand at 2854.313 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 2,852,026 + Echvi_2408 0.88 -1.0 2,852,027 - Echvi_2408 0.88 -0.7 2,852,088 - +1.1 2,852,175 - -1.8 2,852,182 - +0.6 2,852,187 - -0.2 2,852,226 + +2.3 2,852,226 + +0.3 2,852,226 + +0.2 2,852,250 + -0.9 2,852,250 + -2.0 2,852,251 - -2.0 2,852,310 + -0.9 2,852,338 + -0.6 2,852,356 + +0.1 2,852,357 - +2.2 2,852,357 - -1.9 2,852,359 + +0.0 2,852,359 + +0.6 2,852,370 + +0.5 2,852,378 + -0.1 2,852,378 + +0.3 2,852,427 + -0.5 2,852,427 + -1.5 2,852,429 + -0.4 2,852,429 + +0.9 2,852,438 + +1.4 2,852,445 - -0.8 2,852,456 + -1.0 2,852,534 + Echvi_2409 0.23 -1.0 2,852,536 + Echvi_2409 0.23 -0.3 2,852,617 + Echvi_2409 0.40 -0.3 2,852,618 - Echvi_2409 0.41 -0.2 2,852,704 + Echvi_2409 0.59 +0.9 2,852,704 + Echvi_2409 0.59 +1.6 2,852,704 + Echvi_2409 0.59 +0.7 2,852,705 - Echvi_2409 0.60 +2.9 2,852,705 - Echvi_2409 0.60 -0.5 2,852,705 - Echvi_2409 0.60 +0.4 2,852,772 + Echvi_2409 0.74 -0.5 2,852,772 + Echvi_2409 0.74 +0.7 2,852,773 - Echvi_2409 0.74 -1.8 2,852,775 - Echvi_2409 0.75 +0.1 2,852,804 + Echvi_2409 0.81 -0.8 2,852,804 + Echvi_2409 0.81 -0.3 2,852,804 + Echvi_2409 0.81 -1.4 2,852,804 + Echvi_2409 0.81 -0.7 2,852,804 + Echvi_2409 0.81 -0.3 2,852,804 + Echvi_2409 0.81 +0.9 2,852,805 - Echvi_2409 0.81 -0.3 2,852,805 - Echvi_2409 0.81 -0.9 2,852,805 - Echvi_2409 0.81 -0.8 2,852,805 - Echvi_2409 0.81 -1.7 2,852,805 - Echvi_2409 0.81 -0.4 2,852,808 + Echvi_2409 0.82 -1.0 2,852,809 - Echvi_2409 0.82 -2.3 2,852,853 + -0.3 2,852,870 + +1.3 2,852,881 + -0.1 2,853,002 + Echvi_2410 0.25 -1.3 2,853,003 - Echvi_2410 0.25 -0.4 2,853,003 - Echvi_2410 0.25 -1.0 2,853,023 - Echvi_2410 0.29 -2.4 2,853,074 - Echvi_2410 0.40 +0.3 2,853,083 + Echvi_2410 0.42 -0.1 2,853,108 - Echvi_2410 0.48 +0.6 2,853,174 + Echvi_2410 0.62 +0.9 2,853,175 - Echvi_2410 0.63 +0.7 2,853,342 - +0.1 2,853,373 + +0.1 2,853,374 - +1.1 2,853,663 + -0.0 2,853,664 - -1.2 2,853,672 + -1.8 2,853,673 - -0.7 2,853,720 - +0.8 2,853,772 + -1.7 2,853,840 - -0.1 2,853,934 + -2.2 2,854,093 + -0.2 2,854,094 - +0.1 2,854,118 + -0.6 2,854,118 + +0.6 2,854,118 + -1.5 2,854,119 - -0.4 2,854,156 - +0.2 2,854,172 + +1.9 2,854,173 - -1.4 2,854,173 - -1.4 2,854,173 - -0.6 2,854,227 + +0.2 2,854,313 + -0.3 2,854,313 + +0.9
Or see this region's nucleotide sequence