Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2049

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2048 and Echvi_2049 are separated by 133 nucleotidesEchvi_2049 and Echvi_2050 overlap by 4 nucleotides Echvi_2048: Echvi_2048 - Glycosyltransferases, probably involved in cell wall biogenesis, at 2,416,973 to 2,418,103 _2048 Echvi_2049: Echvi_2049 - tRNA-guanine transglycosylase, queuosine-34-forming, at 2,418,237 to 2,419,367 _2049 Echvi_2050: Echvi_2050 - Predicted permeases, at 2,419,364 to 2,420,440 _2050 Position (kb) 2418 2419 2420Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2417.251 kb on + strand, within Echvi_2048at 2417.263 kb on + strand, within Echvi_2048at 2417.304 kb on + strand, within Echvi_2048at 2417.304 kb on + strand, within Echvi_2048at 2417.304 kb on + strand, within Echvi_2048at 2417.304 kb on + strand, within Echvi_2048at 2417.304 kb on + strand, within Echvi_2048at 2417.305 kb on - strand, within Echvi_2048at 2417.307 kb on + strand, within Echvi_2048at 2417.357 kb on + strand, within Echvi_2048at 2417.357 kb on + strand, within Echvi_2048at 2417.400 kb on + strand, within Echvi_2048at 2417.400 kb on + strand, within Echvi_2048at 2417.400 kb on + strand, within Echvi_2048at 2417.402 kb on + strand, within Echvi_2048at 2417.402 kb on + strand, within Echvi_2048at 2417.402 kb on + strand, within Echvi_2048at 2417.402 kb on + strand, within Echvi_2048at 2417.402 kb on + strand, within Echvi_2048at 2417.403 kb on - strand, within Echvi_2048at 2417.425 kb on + strand, within Echvi_2048at 2417.480 kb on + strand, within Echvi_2048at 2417.539 kb on + strand, within Echvi_2048at 2417.577 kb on - strand, within Echvi_2048at 2417.715 kb on + strand, within Echvi_2048at 2417.715 kb on + strand, within Echvi_2048at 2417.716 kb on - strand, within Echvi_2048at 2417.716 kb on - strand, within Echvi_2048at 2417.716 kb on - strand, within Echvi_2048at 2417.728 kb on + strand, within Echvi_2048at 2417.728 kb on + strand, within Echvi_2048at 2417.740 kb on + strand, within Echvi_2048at 2417.740 kb on + strand, within Echvi_2048at 2417.748 kb on + strand, within Echvi_2048at 2417.749 kb on - strand, within Echvi_2048at 2417.749 kb on - strand, within Echvi_2048at 2417.779 kb on - strand, within Echvi_2048at 2417.779 kb on - strand, within Echvi_2048at 2417.779 kb on - strand, within Echvi_2048at 2417.850 kb on + strand, within Echvi_2048at 2417.873 kb on + strand, within Echvi_2048at 2417.874 kb on - strand, within Echvi_2048at 2417.874 kb on - strand, within Echvi_2048at 2417.942 kb on - strand, within Echvi_2048at 2417.942 kb on - strand, within Echvi_2048at 2418.020 kb on + strandat 2418.021 kb on - strandat 2418.021 kb on - strandat 2418.021 kb on - strandat 2418.021 kb on - strandat 2418.021 kb on - strandat 2418.021 kb on - strandat 2418.021 kb on - strandat 2418.021 kb on - strandat 2418.049 kb on + strandat 2418.056 kb on + strandat 2418.057 kb on - strandat 2418.065 kb on - strandat 2418.065 kb on - strandat 2418.122 kb on + strandat 2418.130 kb on + strandat 2418.160 kb on + strandat 2418.192 kb on + strandat 2418.250 kb on + strandat 2418.329 kb on + strandat 2418.379 kb on + strand, within Echvi_2049at 2418.384 kb on + strand, within Echvi_2049at 2418.404 kb on + strand, within Echvi_2049at 2418.420 kb on + strand, within Echvi_2049at 2418.420 kb on + strand, within Echvi_2049at 2418.420 kb on + strand, within Echvi_2049at 2418.429 kb on + strand, within Echvi_2049at 2418.429 kb on + strand, within Echvi_2049at 2418.494 kb on + strand, within Echvi_2049at 2418.599 kb on + strand, within Echvi_2049at 2418.632 kb on + strand, within Echvi_2049at 2418.634 kb on + strand, within Echvi_2049at 2418.634 kb on + strand, within Echvi_2049at 2418.680 kb on + strand, within Echvi_2049at 2418.754 kb on + strand, within Echvi_2049at 2418.783 kb on + strand, within Echvi_2049at 2418.783 kb on + strand, within Echvi_2049at 2418.828 kb on + strand, within Echvi_2049at 2418.830 kb on + strand, within Echvi_2049at 2418.830 kb on + strand, within Echvi_2049at 2418.971 kb on + strand, within Echvi_2049at 2418.998 kb on + strand, within Echvi_2049at 2419.197 kb on + strand, within Echvi_2049at 2419.211 kb on + strand, within Echvi_2049at 2419.269 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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2,417,251 + Echvi_2048 0.25 -0.0
2,417,263 + Echvi_2048 0.26 +1.2
2,417,304 + Echvi_2048 0.29 +0.8
2,417,304 + Echvi_2048 0.29 +1.4
2,417,304 + Echvi_2048 0.29 -0.1
2,417,304 + Echvi_2048 0.29 +3.8
2,417,304 + Echvi_2048 0.29 -1.7
2,417,305 - Echvi_2048 0.29 -0.5
2,417,307 + Echvi_2048 0.30 +0.1
2,417,357 + Echvi_2048 0.34 +1.1
2,417,357 + Echvi_2048 0.34 +1.2
2,417,400 + Echvi_2048 0.38 +2.1
2,417,400 + Echvi_2048 0.38 +0.6
2,417,400 + Echvi_2048 0.38 -1.7
2,417,402 + Echvi_2048 0.38 -2.4
2,417,402 + Echvi_2048 0.38 -0.4
2,417,402 + Echvi_2048 0.38 -0.5
2,417,402 + Echvi_2048 0.38 +0.3
2,417,402 + Echvi_2048 0.38 +0.4
2,417,403 - Echvi_2048 0.38 +0.2
2,417,425 + Echvi_2048 0.40 +0.1
2,417,480 + Echvi_2048 0.45 -0.0
2,417,539 + Echvi_2048 0.50 -0.4
2,417,577 - Echvi_2048 0.53 -0.0
2,417,715 + Echvi_2048 0.66 +0.4
2,417,715 + Echvi_2048 0.66 -0.3
2,417,716 - Echvi_2048 0.66 -0.1
2,417,716 - Echvi_2048 0.66 -0.1
2,417,716 - Echvi_2048 0.66 -1.1
2,417,728 + Echvi_2048 0.67 -0.6
2,417,728 + Echvi_2048 0.67 +0.1
2,417,740 + Echvi_2048 0.68 -1.5
2,417,740 + Echvi_2048 0.68 +0.9
2,417,748 + Echvi_2048 0.69 -1.4
2,417,749 - Echvi_2048 0.69 -3.3
2,417,749 - Echvi_2048 0.69 -0.5
2,417,779 - Echvi_2048 0.71 +0.2
2,417,779 - Echvi_2048 0.71 +1.2
2,417,779 - Echvi_2048 0.71 -2.2
2,417,850 + Echvi_2048 0.78 -0.3
2,417,873 + Echvi_2048 0.80 +3.8
2,417,874 - Echvi_2048 0.80 -0.7
2,417,874 - Echvi_2048 0.80 +0.8
2,417,942 - Echvi_2048 0.86 -0.3
2,417,942 - Echvi_2048 0.86 +0.3
2,418,020 + +0.5
2,418,021 - -0.5
2,418,021 - +0.3
2,418,021 - -1.0
2,418,021 - -1.2
2,418,021 - +0.0
2,418,021 - +0.3
2,418,021 - +0.4
2,418,021 - +0.7
2,418,049 + -0.4
2,418,056 + +0.8
2,418,057 - -0.4
2,418,065 - +0.6
2,418,065 - -0.5
2,418,122 + +1.1
2,418,130 + -0.3
2,418,160 + +3.1
2,418,192 + +0.2
2,418,250 + -0.9
2,418,329 + +0.4
2,418,379 + Echvi_2049 0.13 -0.8
2,418,384 + Echvi_2049 0.13 -1.9
2,418,404 + Echvi_2049 0.15 -2.1
2,418,420 + Echvi_2049 0.16 -1.0
2,418,420 + Echvi_2049 0.16 -3.4
2,418,420 + Echvi_2049 0.16 -1.0
2,418,429 + Echvi_2049 0.17 -0.9
2,418,429 + Echvi_2049 0.17 -0.7
2,418,494 + Echvi_2049 0.23 -3.2
2,418,599 + Echvi_2049 0.32 -2.5
2,418,632 + Echvi_2049 0.35 +0.1
2,418,634 + Echvi_2049 0.35 -0.6
2,418,634 + Echvi_2049 0.35 -0.4
2,418,680 + Echvi_2049 0.39 -0.6
2,418,754 + Echvi_2049 0.46 +0.7
2,418,783 + Echvi_2049 0.48 +1.2
2,418,783 + Echvi_2049 0.48 +0.1
2,418,828 + Echvi_2049 0.52 +0.3
2,418,830 + Echvi_2049 0.52 +1.2
2,418,830 + Echvi_2049 0.52 -1.4
2,418,971 + Echvi_2049 0.65 +1.8
2,418,998 + Echvi_2049 0.67 +0.6
2,419,197 + Echvi_2049 0.85 -0.9
2,419,211 + Echvi_2049 0.86 +1.1
2,419,269 + -2.1

Or see this region's nucleotide sequence