Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1846

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1845 and Echvi_1846 are separated by 42 nucleotidesEchvi_1846 and Echvi_1847 are separated by 34 nucleotides Echvi_1845: Echvi_1845 - 2-hydroxy-3-keto-glucal transporter (from data), at 2,160,667 to 2,161,899 _1845 Echvi_1846: Echvi_1846 - 3-keto-beta-glycoside 1,2-lyase (from data), at 2,161,942 to 2,162,775 _1846 Echvi_1847: Echvi_1847 - periplasmic glucoside 3-dehydrogenase (lacA subunit) (EC 1.1.99.13) (from data), at 2,162,810 to 2,164,489 _1847 Position (kb) 2161 2162 2163Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2160.964 kb on + strand, within Echvi_1845at 2160.964 kb on + strand, within Echvi_1845at 2160.965 kb on - strand, within Echvi_1845at 2160.965 kb on - strand, within Echvi_1845at 2160.976 kb on + strand, within Echvi_1845at 2160.977 kb on - strand, within Echvi_1845at 2160.988 kb on + strand, within Echvi_1845at 2160.990 kb on + strand, within Echvi_1845at 2160.990 kb on + strand, within Echvi_1845at 2160.991 kb on - strand, within Echvi_1845at 2161.065 kb on + strand, within Echvi_1845at 2161.165 kb on + strand, within Echvi_1845at 2161.165 kb on + strand, within Echvi_1845at 2161.166 kb on - strand, within Echvi_1845at 2161.166 kb on - strand, within Echvi_1845at 2161.166 kb on - strand, within Echvi_1845at 2161.200 kb on - strand, within Echvi_1845at 2161.210 kb on + strand, within Echvi_1845at 2161.218 kb on + strand, within Echvi_1845at 2161.218 kb on + strand, within Echvi_1845at 2161.218 kb on + strand, within Echvi_1845at 2161.218 kb on + strand, within Echvi_1845at 2161.219 kb on - strand, within Echvi_1845at 2161.219 kb on - strand, within Echvi_1845at 2161.219 kb on - strand, within Echvi_1845at 2161.369 kb on + strand, within Echvi_1845at 2161.370 kb on - strand, within Echvi_1845at 2161.370 kb on - strand, within Echvi_1845at 2161.373 kb on - strand, within Echvi_1845at 2161.420 kb on - strand, within Echvi_1845at 2161.420 kb on - strand, within Echvi_1845at 2161.544 kb on - strand, within Echvi_1845at 2161.651 kb on + strand, within Echvi_1845at 2161.654 kb on - strand, within Echvi_1845at 2161.717 kb on + strand, within Echvi_1845at 2161.771 kb on + strand, within Echvi_1845at 2161.774 kb on - strand, within Echvi_1845at 2161.786 kb on - strandat 2161.901 kb on - strandat 2161.924 kb on - strandat 2161.924 kb on - strandat 2161.965 kb on + strandat 2162.022 kb on + strandat 2162.023 kb on - strandat 2162.050 kb on + strand, within Echvi_1846at 2162.050 kb on + strand, within Echvi_1846at 2162.051 kb on - strand, within Echvi_1846at 2162.051 kb on - strand, within Echvi_1846at 2162.051 kb on - strand, within Echvi_1846at 2162.075 kb on + strand, within Echvi_1846at 2162.075 kb on + strand, within Echvi_1846at 2162.075 kb on + strand, within Echvi_1846at 2162.076 kb on - strand, within Echvi_1846at 2162.076 kb on - strand, within Echvi_1846at 2162.092 kb on + strand, within Echvi_1846at 2162.095 kb on - strand, within Echvi_1846at 2162.104 kb on - strand, within Echvi_1846at 2162.152 kb on + strand, within Echvi_1846at 2162.152 kb on + strand, within Echvi_1846at 2162.161 kb on + strand, within Echvi_1846at 2162.162 kb on - strand, within Echvi_1846at 2162.162 kb on - strand, within Echvi_1846at 2162.209 kb on - strand, within Echvi_1846at 2162.319 kb on + strand, within Echvi_1846at 2162.352 kb on - strand, within Echvi_1846at 2162.352 kb on - strand, within Echvi_1846at 2162.352 kb on - strand, within Echvi_1846at 2162.430 kb on - strand, within Echvi_1846at 2162.430 kb on - strand, within Echvi_1846at 2162.445 kb on + strand, within Echvi_1846at 2162.445 kb on + strand, within Echvi_1846at 2162.445 kb on + strand, within Echvi_1846at 2162.446 kb on - strand, within Echvi_1846at 2162.446 kb on - strand, within Echvi_1846at 2162.515 kb on + strand, within Echvi_1846at 2162.524 kb on + strand, within Echvi_1846at 2162.524 kb on + strand, within Echvi_1846at 2162.524 kb on + strand, within Echvi_1846at 2162.524 kb on + strand, within Echvi_1846at 2162.525 kb on - strand, within Echvi_1846at 2162.525 kb on - strand, within Echvi_1846at 2162.529 kb on + strand, within Echvi_1846at 2162.530 kb on - strand, within Echvi_1846at 2162.581 kb on + strand, within Echvi_1846at 2162.581 kb on + strand, within Echvi_1846at 2162.582 kb on - strand, within Echvi_1846at 2162.582 kb on - strand, within Echvi_1846at 2162.582 kb on - strand, within Echvi_1846at 2162.582 kb on - strand, within Echvi_1846at 2162.584 kb on + strand, within Echvi_1846at 2162.584 kb on + strand, within Echvi_1846at 2162.593 kb on + strand, within Echvi_1846at 2162.594 kb on - strand, within Echvi_1846at 2162.598 kb on + strand, within Echvi_1846at 2162.599 kb on - strand, within Echvi_1846at 2162.599 kb on - strand, within Echvi_1846at 2162.645 kb on + strand, within Echvi_1846at 2162.646 kb on - strand, within Echvi_1846at 2162.646 kb on - strand, within Echvi_1846at 2162.646 kb on - strand, within Echvi_1846at 2162.689 kb on - strand, within Echvi_1846at 2162.695 kb on + strandat 2162.696 kb on - strandat 2162.697 kb on + strandat 2162.697 kb on + strandat 2162.697 kb on + strandat 2162.698 kb on - strandat 2162.763 kb on - strandat 2162.788 kb on + strandat 2162.789 kb on - strandat 2162.792 kb on - strandat 2162.798 kb on + strandat 2162.800 kb on + strandat 2162.810 kb on - strandat 2162.825 kb on + strandat 2162.825 kb on + strandat 2162.851 kb on + strandat 2162.851 kb on + strandat 2162.851 kb on + strandat 2162.852 kb on - strandat 2162.852 kb on - strandat 2162.853 kb on + strandat 2162.872 kb on + strandat 2162.907 kb on + strandat 2162.929 kb on - strandat 2162.948 kb on - strandat 2163.038 kb on + strand, within Echvi_1847at 2163.038 kb on + strand, within Echvi_1847at 2163.039 kb on - strand, within Echvi_1847at 2163.083 kb on - strand, within Echvi_1847at 2163.083 kb on - strand, within Echvi_1847at 2163.092 kb on + strand, within Echvi_1847at 2163.093 kb on - strand, within Echvi_1847at 2163.093 kb on - strand, within Echvi_1847at 2163.093 kb on - strand, within Echvi_1847at 2163.096 kb on + strand, within Echvi_1847at 2163.096 kb on + strand, within Echvi_1847at 2163.097 kb on - strand, within Echvi_1847at 2163.113 kb on - strand, within Echvi_1847at 2163.204 kb on + strand, within Echvi_1847at 2163.241 kb on + strand, within Echvi_1847at 2163.242 kb on - strand, within Echvi_1847at 2163.242 kb on - strand, within Echvi_1847at 2163.267 kb on - strand, within Echvi_1847at 2163.335 kb on - strand, within Echvi_1847at 2163.372 kb on + strand, within Echvi_1847at 2163.373 kb on - strand, within Echvi_1847at 2163.373 kb on - strand, within Echvi_1847at 2163.482 kb on - strand, within Echvi_1847at 2163.482 kb on - strand, within Echvi_1847at 2163.482 kb on - strand, within Echvi_1847at 2163.513 kb on - strand, within Echvi_1847at 2163.513 kb on - strand, within Echvi_1847at 2163.533 kb on - strand, within Echvi_1847at 2163.564 kb on + strand, within Echvi_1847at 2163.588 kb on + strand, within Echvi_1847at 2163.588 kb on + strand, within Echvi_1847at 2163.589 kb on - strand, within Echvi_1847at 2163.589 kb on - strand, within Echvi_1847at 2163.598 kb on - strand, within Echvi_1847at 2163.603 kb on - strand, within Echvi_1847at 2163.603 kb on - strand, within Echvi_1847at 2163.671 kb on + strand, within Echvi_1847at 2163.673 kb on + strand, within Echvi_1847at 2163.673 kb on + strand, within Echvi_1847at 2163.688 kb on - strand, within Echvi_1847at 2163.709 kb on + strand, within Echvi_1847at 2163.723 kb on + strand, within Echvi_1847at 2163.724 kb on - strand, within Echvi_1847at 2163.724 kb on - strand, within Echvi_1847at 2163.745 kb on + strand, within Echvi_1847at 2163.746 kb on - strand, within Echvi_1847at 2163.769 kb on + strand, within Echvi_1847at 2163.769 kb on + strand, within Echvi_1847at 2163.769 kb on + strand, within Echvi_1847

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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2,160,964 + Echvi_1845 0.24 -0.1
2,160,964 + Echvi_1845 0.24 -0.0
2,160,965 - Echvi_1845 0.24 -0.3
2,160,965 - Echvi_1845 0.24 +0.5
2,160,976 + Echvi_1845 0.25 -1.4
2,160,977 - Echvi_1845 0.25 -0.4
2,160,988 + Echvi_1845 0.26 -1.1
2,160,990 + Echvi_1845 0.26 +1.2
2,160,990 + Echvi_1845 0.26 -1.7
2,160,991 - Echvi_1845 0.26 -0.3
2,161,065 + Echvi_1845 0.32 +0.2
2,161,165 + Echvi_1845 0.40 -0.0
2,161,165 + Echvi_1845 0.40 +0.0
2,161,166 - Echvi_1845 0.40 -2.8
2,161,166 - Echvi_1845 0.40 -0.6
2,161,166 - Echvi_1845 0.40 +0.8
2,161,200 - Echvi_1845 0.43 -2.3
2,161,210 + Echvi_1845 0.44 -0.6
2,161,218 + Echvi_1845 0.45 -0.6
2,161,218 + Echvi_1845 0.45 -2.8
2,161,218 + Echvi_1845 0.45 +1.7
2,161,218 + Echvi_1845 0.45 -2.1
2,161,219 - Echvi_1845 0.45 +2.6
2,161,219 - Echvi_1845 0.45 -1.0
2,161,219 - Echvi_1845 0.45 +0.0
2,161,369 + Echvi_1845 0.57 +0.2
2,161,370 - Echvi_1845 0.57 +0.4
2,161,370 - Echvi_1845 0.57 -1.9
2,161,373 - Echvi_1845 0.57 +0.8
2,161,420 - Echvi_1845 0.61 -0.2
2,161,420 - Echvi_1845 0.61 -0.3
2,161,544 - Echvi_1845 0.71 -0.9
2,161,651 + Echvi_1845 0.80 -0.3
2,161,654 - Echvi_1845 0.80 +3.4
2,161,717 + Echvi_1845 0.85 -0.1
2,161,771 + Echvi_1845 0.90 +1.2
2,161,774 - Echvi_1845 0.90 +0.8
2,161,786 - -0.8
2,161,901 - +0.2
2,161,924 - +3.1
2,161,924 - +0.8
2,161,965 + +1.6
2,162,022 + -0.5
2,162,023 - +0.5
2,162,050 + Echvi_1846 0.13 +1.2
2,162,050 + Echvi_1846 0.13 +1.0
2,162,051 - Echvi_1846 0.13 -0.9
2,162,051 - Echvi_1846 0.13 +0.0
2,162,051 - Echvi_1846 0.13 +2.5
2,162,075 + Echvi_1846 0.16 +1.9
2,162,075 + Echvi_1846 0.16 +1.6
2,162,075 + Echvi_1846 0.16 +0.6
2,162,076 - Echvi_1846 0.16 -0.4
2,162,076 - Echvi_1846 0.16 -0.4
2,162,092 + Echvi_1846 0.18 -1.6
2,162,095 - Echvi_1846 0.18 -0.2
2,162,104 - Echvi_1846 0.19 +0.2
2,162,152 + Echvi_1846 0.25 -0.2
2,162,152 + Echvi_1846 0.25 +0.2
2,162,161 + Echvi_1846 0.26 -1.3
2,162,162 - Echvi_1846 0.26 -0.3
2,162,162 - Echvi_1846 0.26 +0.3
2,162,209 - Echvi_1846 0.32 -1.1
2,162,319 + Echvi_1846 0.45 -1.4
2,162,352 - Echvi_1846 0.49 +0.1
2,162,352 - Echvi_1846 0.49 -0.5
2,162,352 - Echvi_1846 0.49 -0.8
2,162,430 - Echvi_1846 0.59 +0.1
2,162,430 - Echvi_1846 0.59 +1.6
2,162,445 + Echvi_1846 0.60 +0.7
2,162,445 + Echvi_1846 0.60 +0.9
2,162,445 + Echvi_1846 0.60 +1.3
2,162,446 - Echvi_1846 0.60 +1.8
2,162,446 - Echvi_1846 0.60 -1.7
2,162,515 + Echvi_1846 0.69 +2.3
2,162,524 + Echvi_1846 0.70 +0.7
2,162,524 + Echvi_1846 0.70 -1.8
2,162,524 + Echvi_1846 0.70 +1.1
2,162,524 + Echvi_1846 0.70 +0.3
2,162,525 - Echvi_1846 0.70 +0.1
2,162,525 - Echvi_1846 0.70 -0.6
2,162,529 + Echvi_1846 0.70 -1.2
2,162,530 - Echvi_1846 0.71 +2.1
2,162,581 + Echvi_1846 0.77 +1.9
2,162,581 + Echvi_1846 0.77 +0.6
2,162,582 - Echvi_1846 0.77 +1.0
2,162,582 - Echvi_1846 0.77 -0.4
2,162,582 - Echvi_1846 0.77 -0.9
2,162,582 - Echvi_1846 0.77 -0.4
2,162,584 + Echvi_1846 0.77 +0.3
2,162,584 + Echvi_1846 0.77 -0.2
2,162,593 + Echvi_1846 0.78 +0.0
2,162,594 - Echvi_1846 0.78 +0.2
2,162,598 + Echvi_1846 0.79 -0.2
2,162,599 - Echvi_1846 0.79 -0.8
2,162,599 - Echvi_1846 0.79 +2.1
2,162,645 + Echvi_1846 0.84 +0.5
2,162,646 - Echvi_1846 0.84 +3.1
2,162,646 - Echvi_1846 0.84 +0.2
2,162,646 - Echvi_1846 0.84 +0.7
2,162,689 - Echvi_1846 0.90 -0.7
2,162,695 + -0.3
2,162,696 - +1.8
2,162,697 + -0.5
2,162,697 + +0.2
2,162,697 + -0.9
2,162,698 - -0.8
2,162,763 - -1.5
2,162,788 + +1.5
2,162,789 - +0.2
2,162,792 - -0.2
2,162,798 + +0.8
2,162,800 + +0.8
2,162,810 - -0.6
2,162,825 + -0.6
2,162,825 + -1.7
2,162,851 + +2.1
2,162,851 + -3.6
2,162,851 + -0.2
2,162,852 - +0.8
2,162,852 - -1.5
2,162,853 + -0.4
2,162,872 + +0.3
2,162,907 + +0.8
2,162,929 - +0.8
2,162,948 - -0.6
2,163,038 + Echvi_1847 0.14 +1.3
2,163,038 + Echvi_1847 0.14 +1.9
2,163,039 - Echvi_1847 0.14 -0.3
2,163,083 - Echvi_1847 0.16 -0.7
2,163,083 - Echvi_1847 0.16 -0.8
2,163,092 + Echvi_1847 0.17 -1.4
2,163,093 - Echvi_1847 0.17 +1.2
2,163,093 - Echvi_1847 0.17 +0.2
2,163,093 - Echvi_1847 0.17 +0.2
2,163,096 + Echvi_1847 0.17 +1.2
2,163,096 + Echvi_1847 0.17 -0.1
2,163,097 - Echvi_1847 0.17 -0.2
2,163,113 - Echvi_1847 0.18 +1.2
2,163,204 + Echvi_1847 0.23 -0.5
2,163,241 + Echvi_1847 0.26 -1.6
2,163,242 - Echvi_1847 0.26 +0.6
2,163,242 - Echvi_1847 0.26 +0.8
2,163,267 - Echvi_1847 0.27 -1.0
2,163,335 - Echvi_1847 0.31 -1.1
2,163,372 + Echvi_1847 0.33 -2.6
2,163,373 - Echvi_1847 0.34 +1.2
2,163,373 - Echvi_1847 0.34 -1.3
2,163,482 - Echvi_1847 0.40 +0.6
2,163,482 - Echvi_1847 0.40 +1.2
2,163,482 - Echvi_1847 0.40 -2.3
2,163,513 - Echvi_1847 0.42 -1.3
2,163,513 - Echvi_1847 0.42 +0.9
2,163,533 - Echvi_1847 0.43 -0.8
2,163,564 + Echvi_1847 0.45 +0.8
2,163,588 + Echvi_1847 0.46 +0.5
2,163,588 + Echvi_1847 0.46 +0.5
2,163,589 - Echvi_1847 0.46 -0.0
2,163,589 - Echvi_1847 0.46 -1.0
2,163,598 - Echvi_1847 0.47 +0.4
2,163,603 - Echvi_1847 0.47 +1.2
2,163,603 - Echvi_1847 0.47 -2.2
2,163,671 + Echvi_1847 0.51 +1.2
2,163,673 + Echvi_1847 0.51 +0.1
2,163,673 + Echvi_1847 0.51 -1.3
2,163,688 - Echvi_1847 0.52 -1.5
2,163,709 + Echvi_1847 0.54 -0.2
2,163,723 + Echvi_1847 0.54 +0.2
2,163,724 - Echvi_1847 0.54 +0.6
2,163,724 - Echvi_1847 0.54 -1.8
2,163,745 + Echvi_1847 0.56 +1.2
2,163,746 - Echvi_1847 0.56 -1.2
2,163,769 + Echvi_1847 0.57 +0.3
2,163,769 + Echvi_1847 0.57 -0.8
2,163,769 + Echvi_1847 0.57 -0.4

Or see this region's nucleotide sequence