Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1368

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1367 and Echvi_1368 are separated by 252 nucleotidesEchvi_1368 and Echvi_1369 are separated by 60 nucleotides Echvi_1367: Echvi_1367 - RteC protein., at 1,571,462 to 1,572,307 _1367 Echvi_1368: Echvi_1368 - hypothetical protein, at 1,572,560 to 1,572,925 _1368 Echvi_1369: Echvi_1369 - Response regulator of the LytR/AlgR family, at 1,572,986 to 1,573,888 _1369 Position (kb) 1572 1573Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1571.589 kb on + strand, within Echvi_1367at 1571.592 kb on + strand, within Echvi_1367at 1571.592 kb on + strand, within Echvi_1367at 1571.602 kb on + strand, within Echvi_1367at 1571.603 kb on - strand, within Echvi_1367at 1571.670 kb on - strand, within Echvi_1367at 1571.691 kb on + strand, within Echvi_1367at 1571.692 kb on - strand, within Echvi_1367at 1571.695 kb on + strand, within Echvi_1367at 1571.696 kb on - strand, within Echvi_1367at 1571.769 kb on - strand, within Echvi_1367at 1571.925 kb on + strand, within Echvi_1367at 1571.958 kb on + strand, within Echvi_1367at 1571.958 kb on + strand, within Echvi_1367at 1571.958 kb on + strand, within Echvi_1367at 1571.959 kb on - strand, within Echvi_1367at 1571.959 kb on - strand, within Echvi_1367at 1571.959 kb on - strand, within Echvi_1367at 1571.964 kb on + strand, within Echvi_1367at 1572.045 kb on - strand, within Echvi_1367at 1572.066 kb on + strand, within Echvi_1367at 1572.066 kb on + strand, within Echvi_1367at 1572.067 kb on - strand, within Echvi_1367at 1572.067 kb on - strand, within Echvi_1367at 1572.067 kb on - strand, within Echvi_1367at 1572.067 kb on - strand, within Echvi_1367at 1572.070 kb on - strand, within Echvi_1367at 1572.081 kb on + strand, within Echvi_1367at 1572.085 kb on - strand, within Echvi_1367at 1572.176 kb on + strand, within Echvi_1367at 1572.261 kb on - strandat 1572.282 kb on + strandat 1572.283 kb on - strandat 1572.315 kb on - strandat 1572.315 kb on - strandat 1572.315 kb on - strandat 1572.315 kb on - strandat 1572.391 kb on + strandat 1572.391 kb on + strandat 1572.507 kb on + strandat 1572.508 kb on - strandat 1572.527 kb on + strandat 1572.552 kb on - strandat 1572.631 kb on + strand, within Echvi_1368at 1572.631 kb on + strand, within Echvi_1368at 1572.739 kb on + strand, within Echvi_1368at 1572.739 kb on + strand, within Echvi_1368at 1572.740 kb on - strand, within Echvi_1368at 1572.802 kb on + strand, within Echvi_1368at 1572.802 kb on + strand, within Echvi_1368at 1572.947 kb on - strandat 1572.947 kb on - strandat 1572.949 kb on + strandat 1572.949 kb on + strandat 1572.955 kb on + strandat 1573.000 kb on + strandat 1573.000 kb on + strandat 1573.000 kb on + strandat 1573.000 kb on + strandat 1573.001 kb on - strandat 1573.005 kb on - strandat 1573.012 kb on + strandat 1573.013 kb on - strandat 1573.013 kb on - strandat 1573.039 kb on + strandat 1573.040 kb on - strandat 1573.101 kb on + strand, within Echvi_1369at 1573.107 kb on - strand, within Echvi_1369at 1573.269 kb on - strand, within Echvi_1369at 1573.273 kb on + strand, within Echvi_1369at 1573.274 kb on - strand, within Echvi_1369at 1573.276 kb on + strand, within Echvi_1369at 1573.296 kb on - strand, within Echvi_1369at 1573.296 kb on - strand, within Echvi_1369at 1573.299 kb on - strand, within Echvi_1369at 1573.394 kb on + strand, within Echvi_1369at 1573.407 kb on - strand, within Echvi_1369at 1573.434 kb on - strand, within Echvi_1369at 1573.437 kb on - strand, within Echvi_1369at 1573.437 kb on - strand, within Echvi_1369at 1573.437 kb on - strand, within Echvi_1369at 1573.446 kb on - strand, within Echvi_1369at 1573.506 kb on - strand, within Echvi_1369at 1573.605 kb on + strand, within Echvi_1369at 1573.617 kb on - strand, within Echvi_1369at 1573.620 kb on + strand, within Echvi_1369at 1573.620 kb on + strand, within Echvi_1369at 1573.620 kb on + strand, within Echvi_1369at 1573.621 kb on - strand, within Echvi_1369at 1573.682 kb on + strand, within Echvi_1369at 1573.808 kb on + strandat 1573.829 kb on - strandat 1573.829 kb on - strandat 1573.834 kb on + strandat 1573.835 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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1,571,589 + Echvi_1367 0.15 -0.5
1,571,592 + Echvi_1367 0.15 -1.2
1,571,592 + Echvi_1367 0.15 +0.8
1,571,602 + Echvi_1367 0.17 -0.5
1,571,603 - Echvi_1367 0.17 -1.6
1,571,670 - Echvi_1367 0.25 -1.4
1,571,691 + Echvi_1367 0.27 -1.9
1,571,692 - Echvi_1367 0.27 -1.2
1,571,695 + Echvi_1367 0.28 +0.1
1,571,696 - Echvi_1367 0.28 -1.6
1,571,769 - Echvi_1367 0.36 +0.6
1,571,925 + Echvi_1367 0.55 +0.6
1,571,958 + Echvi_1367 0.59 -0.4
1,571,958 + Echvi_1367 0.59 -1.2
1,571,958 + Echvi_1367 0.59 -1.8
1,571,959 - Echvi_1367 0.59 +1.1
1,571,959 - Echvi_1367 0.59 -0.5
1,571,959 - Echvi_1367 0.59 -1.8
1,571,964 + Echvi_1367 0.59 -1.8
1,572,045 - Echvi_1367 0.69 +1.0
1,572,066 + Echvi_1367 0.71 -0.4
1,572,066 + Echvi_1367 0.71 -0.2
1,572,067 - Echvi_1367 0.72 +0.1
1,572,067 - Echvi_1367 0.72 -2.0
1,572,067 - Echvi_1367 0.72 -0.8
1,572,067 - Echvi_1367 0.72 -0.1
1,572,070 - Echvi_1367 0.72 -0.4
1,572,081 + Echvi_1367 0.73 -1.1
1,572,085 - Echvi_1367 0.74 -0.4
1,572,176 + Echvi_1367 0.84 -0.9
1,572,261 - -0.4
1,572,282 + -0.2
1,572,283 - -0.7
1,572,315 - +0.4
1,572,315 - -0.8
1,572,315 - -1.0
1,572,315 - +2.9
1,572,391 + -1.2
1,572,391 + -0.1
1,572,507 + +0.1
1,572,508 - -0.7
1,572,527 + +1.4
1,572,552 - -0.3
1,572,631 + Echvi_1368 0.19 -0.9
1,572,631 + Echvi_1368 0.19 -0.2
1,572,739 + Echvi_1368 0.49 +0.1
1,572,739 + Echvi_1368 0.49 -0.2
1,572,740 - Echvi_1368 0.49 -3.2
1,572,802 + Echvi_1368 0.66 -0.1
1,572,802 + Echvi_1368 0.66 -2.0
1,572,947 - -2.3
1,572,947 - +0.7
1,572,949 + +0.4
1,572,949 + -0.7
1,572,955 + +2.2
1,573,000 + -1.5
1,573,000 + +0.4
1,573,000 + +2.1
1,573,000 + +1.8
1,573,001 - +1.9
1,573,005 - -1.1
1,573,012 + -1.0
1,573,013 - +1.4
1,573,013 - +1.9
1,573,039 + +0.0
1,573,040 - -0.8
1,573,101 + Echvi_1369 0.13 -0.2
1,573,107 - Echvi_1369 0.13 -1.0
1,573,269 - Echvi_1369 0.31 -0.9
1,573,273 + Echvi_1369 0.32 +1.0
1,573,274 - Echvi_1369 0.32 -0.6
1,573,276 + Echvi_1369 0.32 +0.4
1,573,296 - Echvi_1369 0.34 -0.6
1,573,296 - Echvi_1369 0.34 +2.2
1,573,299 - Echvi_1369 0.35 +0.8
1,573,394 + Echvi_1369 0.45 +0.4
1,573,407 - Echvi_1369 0.47 +1.4
1,573,434 - Echvi_1369 0.50 -2.4
1,573,437 - Echvi_1369 0.50 +2.9
1,573,437 - Echvi_1369 0.50 +1.4
1,573,437 - Echvi_1369 0.50 +0.4
1,573,446 - Echvi_1369 0.51 +1.6
1,573,506 - Echvi_1369 0.58 +1.1
1,573,605 + Echvi_1369 0.69 -0.9
1,573,617 - Echvi_1369 0.70 -0.4
1,573,620 + Echvi_1369 0.70 -1.3
1,573,620 + Echvi_1369 0.70 -1.5
1,573,620 + Echvi_1369 0.70 +0.2
1,573,621 - Echvi_1369 0.70 +0.4
1,573,682 + Echvi_1369 0.77 -0.9
1,573,808 + -0.0
1,573,829 - +1.8
1,573,829 - +0.0
1,573,834 + -0.1
1,573,835 - -1.0

Or see this region's nucleotide sequence