Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1367 and Echvi_1368 are separated by 252 nucleotides Echvi_1368 and Echvi_1369 are separated by 60 nucleotides
Echvi_1367: Echvi_1367 - RteC protein., at 1,571,462 to 1,572,307
_1367
Echvi_1368: Echvi_1368 - hypothetical protein, at 1,572,560 to 1,572,925
_1368
Echvi_1369: Echvi_1369 - Response regulator of the LytR/AlgR family, at 1,572,986 to 1,573,888
_1369
Position (kb)
1572
1573 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1571.589 kb on + strand, within Echvi_1367 at 1571.592 kb on + strand, within Echvi_1367 at 1571.592 kb on + strand, within Echvi_1367 at 1571.602 kb on + strand, within Echvi_1367 at 1571.603 kb on - strand, within Echvi_1367 at 1571.670 kb on - strand, within Echvi_1367 at 1571.691 kb on + strand, within Echvi_1367 at 1571.692 kb on - strand, within Echvi_1367 at 1571.695 kb on + strand, within Echvi_1367 at 1571.696 kb on - strand, within Echvi_1367 at 1571.769 kb on - strand, within Echvi_1367 at 1571.925 kb on + strand, within Echvi_1367 at 1571.958 kb on + strand, within Echvi_1367 at 1571.958 kb on + strand, within Echvi_1367 at 1571.958 kb on + strand, within Echvi_1367 at 1571.959 kb on - strand, within Echvi_1367 at 1571.959 kb on - strand, within Echvi_1367 at 1571.959 kb on - strand, within Echvi_1367 at 1571.964 kb on + strand, within Echvi_1367 at 1572.045 kb on - strand, within Echvi_1367 at 1572.066 kb on + strand, within Echvi_1367 at 1572.066 kb on + strand, within Echvi_1367 at 1572.067 kb on - strand, within Echvi_1367 at 1572.067 kb on - strand, within Echvi_1367 at 1572.067 kb on - strand, within Echvi_1367 at 1572.067 kb on - strand, within Echvi_1367 at 1572.070 kb on - strand, within Echvi_1367 at 1572.081 kb on + strand, within Echvi_1367 at 1572.085 kb on - strand, within Echvi_1367 at 1572.176 kb on + strand, within Echvi_1367 at 1572.261 kb on - strand at 1572.282 kb on + strand at 1572.283 kb on - strand at 1572.315 kb on - strand at 1572.315 kb on - strand at 1572.315 kb on - strand at 1572.315 kb on - strand at 1572.391 kb on + strand at 1572.391 kb on + strand at 1572.507 kb on + strand at 1572.508 kb on - strand at 1572.527 kb on + strand at 1572.552 kb on - strand at 1572.631 kb on + strand, within Echvi_1368 at 1572.631 kb on + strand, within Echvi_1368 at 1572.739 kb on + strand, within Echvi_1368 at 1572.739 kb on + strand, within Echvi_1368 at 1572.740 kb on - strand, within Echvi_1368 at 1572.802 kb on + strand, within Echvi_1368 at 1572.802 kb on + strand, within Echvi_1368 at 1572.947 kb on - strand at 1572.947 kb on - strand at 1572.949 kb on + strand at 1572.949 kb on + strand at 1572.955 kb on + strand at 1573.000 kb on + strand at 1573.000 kb on + strand at 1573.000 kb on + strand at 1573.000 kb on + strand at 1573.001 kb on - strand at 1573.005 kb on - strand at 1573.012 kb on + strand at 1573.013 kb on - strand at 1573.013 kb on - strand at 1573.039 kb on + strand at 1573.040 kb on - strand at 1573.101 kb on + strand, within Echvi_1369 at 1573.107 kb on - strand, within Echvi_1369 at 1573.269 kb on - strand, within Echvi_1369 at 1573.273 kb on + strand, within Echvi_1369 at 1573.274 kb on - strand, within Echvi_1369 at 1573.276 kb on + strand, within Echvi_1369 at 1573.296 kb on - strand, within Echvi_1369 at 1573.296 kb on - strand, within Echvi_1369 at 1573.299 kb on - strand, within Echvi_1369 at 1573.394 kb on + strand, within Echvi_1369 at 1573.407 kb on - strand, within Echvi_1369 at 1573.434 kb on - strand, within Echvi_1369 at 1573.437 kb on - strand, within Echvi_1369 at 1573.437 kb on - strand, within Echvi_1369 at 1573.437 kb on - strand, within Echvi_1369 at 1573.446 kb on - strand, within Echvi_1369 at 1573.506 kb on - strand, within Echvi_1369 at 1573.605 kb on + strand, within Echvi_1369 at 1573.617 kb on - strand, within Echvi_1369 at 1573.620 kb on + strand, within Echvi_1369 at 1573.620 kb on + strand, within Echvi_1369 at 1573.620 kb on + strand, within Echvi_1369 at 1573.621 kb on - strand, within Echvi_1369 at 1573.682 kb on + strand, within Echvi_1369 at 1573.808 kb on + strand at 1573.829 kb on - strand at 1573.829 kb on - strand at 1573.834 kb on + strand at 1573.835 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 1,571,589 + Echvi_1367 0.15 -0.5 1,571,592 + Echvi_1367 0.15 -1.2 1,571,592 + Echvi_1367 0.15 +0.8 1,571,602 + Echvi_1367 0.17 -0.5 1,571,603 - Echvi_1367 0.17 -1.6 1,571,670 - Echvi_1367 0.25 -1.4 1,571,691 + Echvi_1367 0.27 -1.9 1,571,692 - Echvi_1367 0.27 -1.2 1,571,695 + Echvi_1367 0.28 +0.1 1,571,696 - Echvi_1367 0.28 -1.6 1,571,769 - Echvi_1367 0.36 +0.6 1,571,925 + Echvi_1367 0.55 +0.6 1,571,958 + Echvi_1367 0.59 -0.4 1,571,958 + Echvi_1367 0.59 -1.2 1,571,958 + Echvi_1367 0.59 -1.8 1,571,959 - Echvi_1367 0.59 +1.1 1,571,959 - Echvi_1367 0.59 -0.5 1,571,959 - Echvi_1367 0.59 -1.8 1,571,964 + Echvi_1367 0.59 -1.8 1,572,045 - Echvi_1367 0.69 +1.0 1,572,066 + Echvi_1367 0.71 -0.4 1,572,066 + Echvi_1367 0.71 -0.2 1,572,067 - Echvi_1367 0.72 +0.1 1,572,067 - Echvi_1367 0.72 -2.0 1,572,067 - Echvi_1367 0.72 -0.8 1,572,067 - Echvi_1367 0.72 -0.1 1,572,070 - Echvi_1367 0.72 -0.4 1,572,081 + Echvi_1367 0.73 -1.1 1,572,085 - Echvi_1367 0.74 -0.4 1,572,176 + Echvi_1367 0.84 -0.9 1,572,261 - -0.4 1,572,282 + -0.2 1,572,283 - -0.7 1,572,315 - +0.4 1,572,315 - -0.8 1,572,315 - -1.0 1,572,315 - +2.9 1,572,391 + -1.2 1,572,391 + -0.1 1,572,507 + +0.1 1,572,508 - -0.7 1,572,527 + +1.4 1,572,552 - -0.3 1,572,631 + Echvi_1368 0.19 -0.9 1,572,631 + Echvi_1368 0.19 -0.2 1,572,739 + Echvi_1368 0.49 +0.1 1,572,739 + Echvi_1368 0.49 -0.2 1,572,740 - Echvi_1368 0.49 -3.2 1,572,802 + Echvi_1368 0.66 -0.1 1,572,802 + Echvi_1368 0.66 -2.0 1,572,947 - -2.3 1,572,947 - +0.7 1,572,949 + +0.4 1,572,949 + -0.7 1,572,955 + +2.2 1,573,000 + -1.5 1,573,000 + +0.4 1,573,000 + +2.1 1,573,000 + +1.8 1,573,001 - +1.9 1,573,005 - -1.1 1,573,012 + -1.0 1,573,013 - +1.4 1,573,013 - +1.9 1,573,039 + +0.0 1,573,040 - -0.8 1,573,101 + Echvi_1369 0.13 -0.2 1,573,107 - Echvi_1369 0.13 -1.0 1,573,269 - Echvi_1369 0.31 -0.9 1,573,273 + Echvi_1369 0.32 +1.0 1,573,274 - Echvi_1369 0.32 -0.6 1,573,276 + Echvi_1369 0.32 +0.4 1,573,296 - Echvi_1369 0.34 -0.6 1,573,296 - Echvi_1369 0.34 +2.2 1,573,299 - Echvi_1369 0.35 +0.8 1,573,394 + Echvi_1369 0.45 +0.4 1,573,407 - Echvi_1369 0.47 +1.4 1,573,434 - Echvi_1369 0.50 -2.4 1,573,437 - Echvi_1369 0.50 +2.9 1,573,437 - Echvi_1369 0.50 +1.4 1,573,437 - Echvi_1369 0.50 +0.4 1,573,446 - Echvi_1369 0.51 +1.6 1,573,506 - Echvi_1369 0.58 +1.1 1,573,605 + Echvi_1369 0.69 -0.9 1,573,617 - Echvi_1369 0.70 -0.4 1,573,620 + Echvi_1369 0.70 -1.3 1,573,620 + Echvi_1369 0.70 -1.5 1,573,620 + Echvi_1369 0.70 +0.2 1,573,621 - Echvi_1369 0.70 +0.4 1,573,682 + Echvi_1369 0.77 -0.9 1,573,808 + -0.0 1,573,829 - +1.8 1,573,829 - +0.0 1,573,834 + -0.1 1,573,835 - -1.0
Or see this region's nucleotide sequence