Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1211

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1209 and Echvi_1210 overlap by 41 nucleotidesEchvi_1210 and Echvi_1211 overlap by 18 nucleotidesEchvi_1211 and Echvi_1212 are separated by 139 nucleotides Echvi_1209: Echvi_1209 - hypothetical protein, at 1,386,268 to 1,386,633 _1209 Echvi_1210: Echvi_1210 - phosphoglycerol geranylgeranyltransferase, at 1,386,593 to 1,387,399 _1210 Echvi_1211: Echvi_1211 - Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain, at 1,387,382 to 1,388,311 _1211 Echvi_1212: Echvi_1212 - Acyl-CoA dehydrogenases, at 1,388,451 to 1,389,590 _1212 Position (kb) 1387 1388 1389Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1386.393 kb on + strand, within Echvi_1209at 1386.393 kb on + strand, within Echvi_1209at 1386.394 kb on - strand, within Echvi_1209at 1386.394 kb on - strand, within Echvi_1209at 1386.394 kb on - strand, within Echvi_1209at 1386.399 kb on + strand, within Echvi_1209at 1386.400 kb on - strand, within Echvi_1209at 1386.400 kb on - strand, within Echvi_1209at 1386.400 kb on - strand, within Echvi_1209at 1386.493 kb on + strand, within Echvi_1209at 1386.494 kb on - strand, within Echvi_1209at 1386.496 kb on - strand, within Echvi_1209at 1386.496 kb on - strand, within Echvi_1209at 1386.496 kb on - strand, within Echvi_1209at 1386.497 kb on + strand, within Echvi_1209at 1386.498 kb on - strand, within Echvi_1209at 1386.498 kb on - strand, within Echvi_1209at 1386.572 kb on + strand, within Echvi_1209at 1386.582 kb on + strand, within Echvi_1209at 1386.583 kb on - strand, within Echvi_1209at 1386.583 kb on - strand, within Echvi_1209at 1386.583 kb on - strand, within Echvi_1209at 1386.596 kb on + strandat 1386.596 kb on + strandat 1386.596 kb on + strandat 1386.596 kb on + strandat 1386.655 kb on - strandat 1386.655 kb on - strandat 1386.763 kb on + strand, within Echvi_1210at 1386.763 kb on + strand, within Echvi_1210at 1386.764 kb on - strand, within Echvi_1210at 1386.796 kb on - strand, within Echvi_1210at 1386.808 kb on + strand, within Echvi_1210at 1386.809 kb on - strand, within Echvi_1210at 1387.022 kb on + strand, within Echvi_1210at 1387.023 kb on - strand, within Echvi_1210at 1387.024 kb on + strand, within Echvi_1210at 1387.024 kb on + strand, within Echvi_1210at 1387.024 kb on + strand, within Echvi_1210at 1387.024 kb on + strand, within Echvi_1210at 1387.024 kb on + strand, within Echvi_1210at 1387.024 kb on + strand, within Echvi_1210at 1387.024 kb on + strand, within Echvi_1210at 1387.024 kb on + strand, within Echvi_1210at 1387.024 kb on + strand, within Echvi_1210at 1387.024 kb on + strand, within Echvi_1210at 1387.024 kb on + strand, within Echvi_1210at 1387.024 kb on + strand, within Echvi_1210at 1387.024 kb on + strand, within Echvi_1210at 1387.024 kb on + strand, within Echvi_1210at 1387.024 kb on + strand, within Echvi_1210at 1387.024 kb on + strand, within Echvi_1210at 1387.025 kb on - strand, within Echvi_1210at 1387.025 kb on - strand, within Echvi_1210at 1387.025 kb on - strand, within Echvi_1210at 1387.025 kb on - strand, within Echvi_1210at 1387.025 kb on - strand, within Echvi_1210at 1387.025 kb on - strand, within Echvi_1210at 1387.025 kb on - strand, within Echvi_1210at 1387.025 kb on - strand, within Echvi_1210at 1387.025 kb on - strand, within Echvi_1210at 1387.025 kb on - strand, within Echvi_1210at 1387.025 kb on - strand, within Echvi_1210at 1387.025 kb on - strand, within Echvi_1210at 1387.025 kb on - strand, within Echvi_1210at 1387.061 kb on + strand, within Echvi_1210at 1387.062 kb on - strand, within Echvi_1210at 1387.062 kb on - strand, within Echvi_1210at 1387.078 kb on - strand, within Echvi_1210at 1387.093 kb on + strand, within Echvi_1210at 1387.093 kb on + strand, within Echvi_1210at 1387.093 kb on + strand, within Echvi_1210at 1387.094 kb on - strand, within Echvi_1210at 1387.094 kb on - strand, within Echvi_1210at 1387.149 kb on - strand, within Echvi_1210at 1387.225 kb on - strand, within Echvi_1210at 1387.225 kb on - strand, within Echvi_1210at 1387.225 kb on - strand, within Echvi_1210at 1387.225 kb on - strand, within Echvi_1210at 1387.362 kb on + strandat 1387.362 kb on + strandat 1387.362 kb on + strandat 1387.373 kb on + strandat 1387.394 kb on - strandat 1387.437 kb on + strandat 1387.437 kb on + strandat 1387.438 kb on - strandat 1387.464 kb on + strandat 1387.465 kb on - strandat 1387.465 kb on - strandat 1387.471 kb on + strandat 1387.492 kb on + strand, within Echvi_1211at 1387.519 kb on + strand, within Echvi_1211at 1387.522 kb on + strand, within Echvi_1211at 1387.529 kb on + strand, within Echvi_1211at 1387.529 kb on + strand, within Echvi_1211at 1387.566 kb on + strand, within Echvi_1211at 1387.567 kb on - strand, within Echvi_1211at 1387.610 kb on + strand, within Echvi_1211at 1387.611 kb on - strand, within Echvi_1211at 1387.611 kb on - strand, within Echvi_1211at 1387.614 kb on + strand, within Echvi_1211at 1387.614 kb on + strand, within Echvi_1211at 1387.614 kb on + strand, within Echvi_1211at 1387.614 kb on + strand, within Echvi_1211at 1387.614 kb on + strand, within Echvi_1211at 1387.625 kb on + strand, within Echvi_1211at 1387.646 kb on + strand, within Echvi_1211at 1387.646 kb on + strand, within Echvi_1211at 1387.646 kb on + strand, within Echvi_1211at 1387.646 kb on + strand, within Echvi_1211at 1387.646 kb on + strand, within Echvi_1211at 1387.686 kb on + strand, within Echvi_1211at 1387.686 kb on + strand, within Echvi_1211at 1387.726 kb on + strand, within Echvi_1211at 1387.726 kb on + strand, within Echvi_1211at 1387.726 kb on + strand, within Echvi_1211at 1387.778 kb on + strand, within Echvi_1211at 1387.816 kb on + strand, within Echvi_1211at 1387.903 kb on + strand, within Echvi_1211at 1387.999 kb on + strand, within Echvi_1211at 1387.999 kb on + strand, within Echvi_1211at 1387.999 kb on + strand, within Echvi_1211at 1388.000 kb on - strand, within Echvi_1211at 1388.000 kb on - strand, within Echvi_1211at 1388.000 kb on - strand, within Echvi_1211at 1388.000 kb on - strand, within Echvi_1211at 1388.016 kb on - strand, within Echvi_1211at 1388.024 kb on + strand, within Echvi_1211at 1388.025 kb on - strand, within Echvi_1211at 1388.148 kb on - strand, within Echvi_1211at 1388.148 kb on - strand, within Echvi_1211at 1388.172 kb on - strand, within Echvi_1211at 1388.190 kb on - strand, within Echvi_1211at 1388.213 kb on + strand, within Echvi_1211at 1388.213 kb on + strand, within Echvi_1211at 1388.213 kb on + strand, within Echvi_1211at 1388.213 kb on + strand, within Echvi_1211at 1388.214 kb on - strand, within Echvi_1211at 1388.233 kb on + strandat 1388.233 kb on + strandat 1388.233 kb on - strandat 1388.234 kb on - strandat 1388.234 kb on - strandat 1388.234 kb on - strandat 1388.244 kb on - strandat 1388.250 kb on + strandat 1388.250 kb on + strandat 1388.251 kb on - strandat 1388.269 kb on - strandat 1388.339 kb on - strandat 1388.365 kb on - strandat 1388.401 kb on + strandat 1388.401 kb on + strandat 1388.474 kb on + strandat 1388.474 kb on + strandat 1388.478 kb on + strandat 1388.544 kb on + strandat 1388.586 kb on + strand, within Echvi_1212at 1388.587 kb on - strand, within Echvi_1212at 1388.626 kb on + strand, within Echvi_1212at 1388.626 kb on + strand, within Echvi_1212at 1388.676 kb on - strand, within Echvi_1212at 1388.737 kb on - strand, within Echvi_1212at 1388.801 kb on - strand, within Echvi_1212at 1388.818 kb on + strand, within Echvi_1212at 1388.819 kb on - strand, within Echvi_1212at 1388.819 kb on - strand, within Echvi_1212at 1388.859 kb on + strand, within Echvi_1212at 1388.859 kb on + strand, within Echvi_1212at 1388.860 kb on - strand, within Echvi_1212at 1388.891 kb on - strand, within Echvi_1212at 1388.891 kb on - strand, within Echvi_1212at 1388.991 kb on - strand, within Echvi_1212at 1388.991 kb on - strand, within Echvi_1212at 1389.039 kb on - strand, within Echvi_1212at 1389.095 kb on - strand, within Echvi_1212at 1389.095 kb on - strand, within Echvi_1212at 1389.095 kb on - strand, within Echvi_1212at 1389.095 kb on - strand, within Echvi_1212at 1389.096 kb on + strand, within Echvi_1212at 1389.097 kb on - strand, within Echvi_1212at 1389.148 kb on + strand, within Echvi_1212at 1389.176 kb on + strand, within Echvi_1212at 1389.258 kb on + strand, within Echvi_1212at 1389.263 kb on - strand, within Echvi_1212

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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1,386,393 + Echvi_1209 0.34 -0.6
1,386,393 + Echvi_1209 0.34 +2.5
1,386,394 - Echvi_1209 0.34 -1.1
1,386,394 - Echvi_1209 0.34 -0.5
1,386,394 - Echvi_1209 0.34 -1.2
1,386,399 + Echvi_1209 0.36 -1.3
1,386,400 - Echvi_1209 0.36 +1.0
1,386,400 - Echvi_1209 0.36 -2.0
1,386,400 - Echvi_1209 0.36 -1.7
1,386,493 + Echvi_1209 0.61 -1.9
1,386,494 - Echvi_1209 0.62 -0.6
1,386,496 - Echvi_1209 0.62 -1.4
1,386,496 - Echvi_1209 0.62 +0.6
1,386,496 - Echvi_1209 0.62 +0.2
1,386,497 + Echvi_1209 0.63 +0.7
1,386,498 - Echvi_1209 0.63 -2.9
1,386,498 - Echvi_1209 0.63 +1.1
1,386,572 + Echvi_1209 0.83 -0.3
1,386,582 + Echvi_1209 0.86 +0.5
1,386,583 - Echvi_1209 0.86 -0.7
1,386,583 - Echvi_1209 0.86 +0.1
1,386,583 - Echvi_1209 0.86 +0.1
1,386,596 + -0.9
1,386,596 + +0.2
1,386,596 + +0.3
1,386,596 + +1.3
1,386,655 - +0.2
1,386,655 - -0.4
1,386,763 + Echvi_1210 0.21 +0.9
1,386,763 + Echvi_1210 0.21 -0.1
1,386,764 - Echvi_1210 0.21 +1.0
1,386,796 - Echvi_1210 0.25 -0.3
1,386,808 + Echvi_1210 0.27 +0.2
1,386,809 - Echvi_1210 0.27 -1.3
1,387,022 + Echvi_1210 0.53 +0.9
1,387,023 - Echvi_1210 0.53 +0.2
1,387,024 + Echvi_1210 0.53 +0.4
1,387,024 + Echvi_1210 0.53 +1.7
1,387,024 + Echvi_1210 0.53 +0.7
1,387,024 + Echvi_1210 0.53 +0.1
1,387,024 + Echvi_1210 0.53 -0.1
1,387,024 + Echvi_1210 0.53 +0.0
1,387,024 + Echvi_1210 0.53 -1.5
1,387,024 + Echvi_1210 0.53 +1.7
1,387,024 + Echvi_1210 0.53 +0.5
1,387,024 + Echvi_1210 0.53 -0.6
1,387,024 + Echvi_1210 0.53 +1.4
1,387,024 + Echvi_1210 0.53 +1.3
1,387,024 + Echvi_1210 0.53 -0.5
1,387,024 + Echvi_1210 0.53 -0.9
1,387,024 + Echvi_1210 0.53 +0.4
1,387,024 + Echvi_1210 0.53 +0.8
1,387,025 - Echvi_1210 0.54 -1.7
1,387,025 - Echvi_1210 0.54 +0.8
1,387,025 - Echvi_1210 0.54 -0.2
1,387,025 - Echvi_1210 0.54 -0.1
1,387,025 - Echvi_1210 0.54 +0.7
1,387,025 - Echvi_1210 0.54 +0.9
1,387,025 - Echvi_1210 0.54 +0.4
1,387,025 - Echvi_1210 0.54 +0.2
1,387,025 - Echvi_1210 0.54 +1.6
1,387,025 - Echvi_1210 0.54 +2.0
1,387,025 - Echvi_1210 0.54 +0.1
1,387,025 - Echvi_1210 0.54 -0.4
1,387,025 - Echvi_1210 0.54 +0.4
1,387,061 + Echvi_1210 0.58 +0.7
1,387,062 - Echvi_1210 0.58 -0.7
1,387,062 - Echvi_1210 0.58 -1.7
1,387,078 - Echvi_1210 0.60 +0.0
1,387,093 + Echvi_1210 0.62 +1.0
1,387,093 + Echvi_1210 0.62 -0.6
1,387,093 + Echvi_1210 0.62 +1.7
1,387,094 - Echvi_1210 0.62 +1.4
1,387,094 - Echvi_1210 0.62 +1.8
1,387,149 - Echvi_1210 0.69 -0.9
1,387,225 - Echvi_1210 0.78 -0.5
1,387,225 - Echvi_1210 0.78 -1.2
1,387,225 - Echvi_1210 0.78 +1.8
1,387,225 - Echvi_1210 0.78 -0.1
1,387,362 + -1.6
1,387,362 + +0.7
1,387,362 + -2.8
1,387,373 + +0.0
1,387,394 - -0.9
1,387,437 + -2.5
1,387,437 + -0.5
1,387,438 - -0.6
1,387,464 + -1.4
1,387,465 - -0.8
1,387,465 - -0.8
1,387,471 + -1.2
1,387,492 + Echvi_1211 0.12 -1.7
1,387,519 + Echvi_1211 0.15 +0.6
1,387,522 + Echvi_1211 0.15 -2.5
1,387,529 + Echvi_1211 0.16 -1.5
1,387,529 + Echvi_1211 0.16 -1.2
1,387,566 + Echvi_1211 0.20 -2.0
1,387,567 - Echvi_1211 0.20 -1.1
1,387,610 + Echvi_1211 0.25 +0.7
1,387,611 - Echvi_1211 0.25 -2.6
1,387,611 - Echvi_1211 0.25 +0.2
1,387,614 + Echvi_1211 0.25 -1.9
1,387,614 + Echvi_1211 0.25 +0.2
1,387,614 + Echvi_1211 0.25 -2.8
1,387,614 + Echvi_1211 0.25 -0.8
1,387,614 + Echvi_1211 0.25 -2.3
1,387,625 + Echvi_1211 0.26 -1.7
1,387,646 + Echvi_1211 0.28 -1.8
1,387,646 + Echvi_1211 0.28 -0.5
1,387,646 + Echvi_1211 0.28 -0.8
1,387,646 + Echvi_1211 0.28 -1.9
1,387,646 + Echvi_1211 0.28 -2.1
1,387,686 + Echvi_1211 0.33 -2.0
1,387,686 + Echvi_1211 0.33 -2.4
1,387,726 + Echvi_1211 0.37 +3.0
1,387,726 + Echvi_1211 0.37 +1.0
1,387,726 + Echvi_1211 0.37 -1.3
1,387,778 + Echvi_1211 0.43 -3.7
1,387,816 + Echvi_1211 0.47 -0.3
1,387,903 + Echvi_1211 0.56 -1.9
1,387,999 + Echvi_1211 0.66 -1.7
1,387,999 + Echvi_1211 0.66 +0.2
1,387,999 + Echvi_1211 0.66 -3.9
1,388,000 - Echvi_1211 0.66 +0.2
1,388,000 - Echvi_1211 0.66 +1.0
1,388,000 - Echvi_1211 0.66 -2.3
1,388,000 - Echvi_1211 0.66 +1.0
1,388,016 - Echvi_1211 0.68 -2.7
1,388,024 + Echvi_1211 0.69 -1.4
1,388,025 - Echvi_1211 0.69 +0.2
1,388,148 - Echvi_1211 0.82 -1.5
1,388,148 - Echvi_1211 0.82 -0.5
1,388,172 - Echvi_1211 0.85 -0.0
1,388,190 - Echvi_1211 0.87 -2.3
1,388,213 + Echvi_1211 0.89 +0.4
1,388,213 + Echvi_1211 0.89 -0.0
1,388,213 + Echvi_1211 0.89 -1.9
1,388,213 + Echvi_1211 0.89 -1.9
1,388,214 - Echvi_1211 0.89 -0.7
1,388,233 + -3.0
1,388,233 + -2.9
1,388,233 - -1.7
1,388,234 - +2.0
1,388,234 - -2.1
1,388,234 - -2.8
1,388,244 - -0.3
1,388,250 + -2.4
1,388,250 + -2.9
1,388,251 - -0.6
1,388,269 - -2.6
1,388,339 - -0.2
1,388,365 - +2.8
1,388,401 + +1.2
1,388,401 + +0.2
1,388,474 + +0.6
1,388,474 + +0.1
1,388,478 + +1.5
1,388,544 + -0.4
1,388,586 + Echvi_1212 0.12 -1.8
1,388,587 - Echvi_1212 0.12 +1.9
1,388,626 + Echvi_1212 0.15 -1.1
1,388,626 + Echvi_1212 0.15 +1.5
1,388,676 - Echvi_1212 0.20 -1.4
1,388,737 - Echvi_1212 0.25 +0.8
1,388,801 - Echvi_1212 0.31 -0.2
1,388,818 + Echvi_1212 0.32 -0.5
1,388,819 - Echvi_1212 0.32 +0.9
1,388,819 - Echvi_1212 0.32 +1.6
1,388,859 + Echvi_1212 0.36 +0.5
1,388,859 + Echvi_1212 0.36 +0.1
1,388,860 - Echvi_1212 0.36 -2.1
1,388,891 - Echvi_1212 0.39 +1.6
1,388,891 - Echvi_1212 0.39 +0.6
1,388,991 - Echvi_1212 0.47 +1.0
1,388,991 - Echvi_1212 0.47 +0.2
1,389,039 - Echvi_1212 0.52 +3.0
1,389,095 - Echvi_1212 0.56 +1.0
1,389,095 - Echvi_1212 0.56 -1.9
1,389,095 - Echvi_1212 0.56 +0.1
1,389,095 - Echvi_1212 0.56 +1.0
1,389,096 + Echvi_1212 0.57 -1.0
1,389,097 - Echvi_1212 0.57 +1.5
1,389,148 + Echvi_1212 0.61 +0.9
1,389,176 + Echvi_1212 0.64 -1.7
1,389,258 + Echvi_1212 0.71 +0.4
1,389,263 - Echvi_1212 0.71 -0.2

Or see this region's nucleotide sequence