Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1065

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1064 and Echvi_1065 are separated by 349 nucleotidesEchvi_1065 and Echvi_1066 are separated by 30 nucleotidesEchvi_1066 and Echvi_1067 are separated by 70 nucleotides Echvi_1064: Echvi_1064 - Predicted endonuclease containing a URI domain, at 1,225,268 to 1,225,585 _1064 Echvi_1065: Echvi_1065 - hypothetical protein, at 1,225,935 to 1,226,375 _1065 Echvi_1066: Echvi_1066 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 1,226,406 to 1,226,981 _1066 Echvi_1067: Echvi_1067 - Acyl carrier protein phosphodiesterase, at 1,227,052 to 1,227,675 _1067 Position (kb) 1225 1226 1227Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1224.973 kb on - strandat 1224.988 kb on - strandat 1225.012 kb on - strandat 1225.012 kb on - strandat 1225.040 kb on - strandat 1225.066 kb on + strandat 1225.067 kb on - strandat 1225.067 kb on - strandat 1225.074 kb on + strandat 1225.075 kb on - strandat 1225.075 kb on - strandat 1225.075 kb on - strandat 1225.087 kb on + strandat 1225.143 kb on + strandat 1225.155 kb on + strandat 1225.156 kb on - strandat 1225.156 kb on - strandat 1225.246 kb on - strandat 1225.246 kb on - strandat 1225.248 kb on + strandat 1225.249 kb on - strandat 1225.249 kb on - strandat 1225.249 kb on - strandat 1225.277 kb on + strandat 1225.277 kb on + strandat 1225.277 kb on + strandat 1225.278 kb on - strandat 1225.278 kb on - strandat 1225.278 kb on - strandat 1225.278 kb on - strandat 1225.283 kb on + strandat 1225.283 kb on + strandat 1225.283 kb on + strandat 1225.283 kb on + strandat 1225.284 kb on - strandat 1225.286 kb on - strandat 1225.314 kb on - strand, within Echvi_1064at 1225.314 kb on - strand, within Echvi_1064at 1225.316 kb on - strand, within Echvi_1064at 1225.335 kb on + strand, within Echvi_1064at 1225.391 kb on + strand, within Echvi_1064at 1225.392 kb on - strand, within Echvi_1064at 1225.392 kb on - strand, within Echvi_1064at 1225.395 kb on + strand, within Echvi_1064at 1225.395 kb on + strand, within Echvi_1064at 1225.413 kb on - strand, within Echvi_1064at 1225.424 kb on + strand, within Echvi_1064at 1225.424 kb on + strand, within Echvi_1064at 1225.424 kb on + strand, within Echvi_1064at 1225.434 kb on + strand, within Echvi_1064at 1225.521 kb on + strand, within Echvi_1064at 1225.521 kb on + strand, within Echvi_1064at 1225.521 kb on + strand, within Echvi_1064at 1225.521 kb on + strand, within Echvi_1064at 1225.522 kb on - strand, within Echvi_1064at 1225.565 kb on + strandat 1225.565 kb on + strandat 1225.566 kb on - strandat 1225.571 kb on - strandat 1225.571 kb on - strandat 1225.667 kb on + strandat 1225.696 kb on - strandat 1225.697 kb on + strandat 1225.698 kb on - strandat 1225.699 kb on + strandat 1225.699 kb on + strandat 1225.699 kb on + strandat 1225.699 kb on + strandat 1225.699 kb on + strandat 1225.700 kb on - strandat 1225.700 kb on - strandat 1225.700 kb on - strandat 1225.700 kb on - strandat 1225.703 kb on + strandat 1225.703 kb on + strandat 1225.703 kb on + strandat 1225.703 kb on + strandat 1225.704 kb on - strandat 1225.715 kb on - strandat 1225.717 kb on + strandat 1225.717 kb on + strandat 1225.792 kb on + strandat 1225.802 kb on - strandat 1225.821 kb on + strandat 1225.821 kb on + strandat 1225.822 kb on - strandat 1225.822 kb on - strandat 1225.836 kb on + strandat 1225.837 kb on - strandat 1225.841 kb on + strandat 1225.842 kb on - strandat 1225.843 kb on + strandat 1225.846 kb on + strandat 1225.847 kb on - strandat 1225.847 kb on - strandat 1225.849 kb on - strandat 1225.873 kb on + strandat 1225.873 kb on + strandat 1225.873 kb on + strandat 1225.873 kb on + strandat 1225.873 kb on + strandat 1225.874 kb on - strandat 1225.882 kb on + strandat 1225.882 kb on + strandat 1225.882 kb on + strandat 1225.882 kb on + strandat 1225.883 kb on - strandat 1225.883 kb on - strandat 1225.883 kb on - strandat 1225.905 kb on + strandat 1225.906 kb on - strandat 1225.909 kb on + strandat 1225.910 kb on - strandat 1225.910 kb on - strandat 1225.912 kb on + strandat 1225.913 kb on - strandat 1225.913 kb on - strandat 1225.934 kb on + strandat 1225.934 kb on + strandat 1225.934 kb on + strandat 1225.935 kb on - strandat 1225.935 kb on - strandat 1225.935 kb on - strandat 1225.975 kb on + strandat 1225.975 kb on + strandat 1225.975 kb on + strandat 1225.976 kb on - strandat 1225.999 kb on + strand, within Echvi_1065at 1226.063 kb on - strand, within Echvi_1065at 1226.069 kb on + strand, within Echvi_1065at 1226.069 kb on + strand, within Echvi_1065at 1226.070 kb on - strand, within Echvi_1065at 1226.073 kb on + strand, within Echvi_1065at 1226.074 kb on - strand, within Echvi_1065at 1226.074 kb on - strand, within Echvi_1065at 1226.095 kb on - strand, within Echvi_1065at 1226.095 kb on - strand, within Echvi_1065at 1226.188 kb on + strand, within Echvi_1065at 1226.331 kb on + strand, within Echvi_1065at 1226.331 kb on + strand, within Echvi_1065at 1226.331 kb on + strand, within Echvi_1065at 1226.332 kb on - strandat 1226.332 kb on - strandat 1226.333 kb on + strandat 1226.382 kb on + strandat 1226.383 kb on - strandat 1226.426 kb on + strandat 1226.426 kb on + strandat 1226.426 kb on + strandat 1226.426 kb on + strandat 1226.427 kb on - strandat 1226.443 kb on + strandat 1226.444 kb on - strandat 1226.514 kb on + strand, within Echvi_1066at 1226.514 kb on + strand, within Echvi_1066at 1226.514 kb on + strand, within Echvi_1066at 1226.514 kb on + strand, within Echvi_1066at 1226.515 kb on - strand, within Echvi_1066at 1226.553 kb on + strand, within Echvi_1066at 1226.553 kb on + strand, within Echvi_1066at 1226.553 kb on + strand, within Echvi_1066at 1226.553 kb on + strand, within Echvi_1066at 1226.554 kb on - strand, within Echvi_1066at 1226.570 kb on - strand, within Echvi_1066at 1226.570 kb on - strand, within Echvi_1066at 1226.617 kb on - strand, within Echvi_1066at 1226.643 kb on - strand, within Echvi_1066at 1226.682 kb on + strand, within Echvi_1066at 1226.705 kb on + strand, within Echvi_1066at 1226.706 kb on - strand, within Echvi_1066at 1226.710 kb on + strand, within Echvi_1066at 1226.710 kb on + strand, within Echvi_1066at 1226.711 kb on - strand, within Echvi_1066at 1226.711 kb on - strand, within Echvi_1066at 1226.711 kb on - strand, within Echvi_1066at 1226.711 kb on - strand, within Echvi_1066at 1226.711 kb on - strand, within Echvi_1066at 1226.711 kb on - strand, within Echvi_1066at 1226.711 kb on - strand, within Echvi_1066at 1226.716 kb on + strand, within Echvi_1066at 1226.716 kb on + strand, within Echvi_1066at 1226.767 kb on + strand, within Echvi_1066at 1226.767 kb on + strand, within Echvi_1066at 1226.768 kb on - strand, within Echvi_1066at 1226.768 kb on - strand, within Echvi_1066at 1226.775 kb on + strand, within Echvi_1066at 1226.799 kb on + strand, within Echvi_1066at 1226.799 kb on + strand, within Echvi_1066at 1226.799 kb on + strand, within Echvi_1066at 1226.799 kb on + strand, within Echvi_1066at 1226.799 kb on + strand, within Echvi_1066at 1226.800 kb on - strand, within Echvi_1066at 1226.800 kb on - strand, within Echvi_1066at 1226.800 kb on - strand, within Echvi_1066at 1226.822 kb on + strand, within Echvi_1066at 1226.822 kb on + strand, within Echvi_1066at 1226.823 kb on - strand, within Echvi_1066at 1226.823 kb on - strand, within Echvi_1066at 1226.823 kb on - strand, within Echvi_1066at 1226.859 kb on + strand, within Echvi_1066at 1226.860 kb on - strand, within Echvi_1066at 1226.860 kb on - strand, within Echvi_1066at 1226.860 kb on - strand, within Echvi_1066at 1226.882 kb on - strand, within Echvi_1066at 1226.910 kb on + strand, within Echvi_1066at 1226.911 kb on - strand, within Echvi_1066at 1226.925 kb on + strandat 1226.959 kb on + strandat 1226.979 kb on + strandat 1226.980 kb on - strandat 1226.989 kb on - strandat 1227.031 kb on - strandat 1227.031 kb on - strandat 1227.031 kb on - strandat 1227.031 kb on - strandat 1227.031 kb on - strandat 1227.031 kb on - strandat 1227.062 kb on + strandat 1227.084 kb on + strandat 1227.168 kb on + strand, within Echvi_1067at 1227.169 kb on - strand, within Echvi_1067at 1227.279 kb on - strand, within Echvi_1067at 1227.279 kb on - strand, within Echvi_1067at 1227.319 kb on + strand, within Echvi_1067at 1227.320 kb on + strand, within Echvi_1067at 1227.320 kb on - strand, within Echvi_1067at 1227.340 kb on + strand, within Echvi_1067at 1227.340 kb on + strand, within Echvi_1067at 1227.340 kb on + strand, within Echvi_1067at 1227.341 kb on - strand, within Echvi_1067at 1227.341 kb on - strand, within Echvi_1067at 1227.341 kb on - strand, within Echvi_1067at 1227.373 kb on + strand, within Echvi_1067at 1227.373 kb on + strand, within Echvi_1067at 1227.373 kb on + strand, within Echvi_1067at 1227.374 kb on - strand, within Echvi_1067at 1227.374 kb on - strand, within Echvi_1067at 1227.375 kb on + strand, within Echvi_1067

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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1,224,973 - -1.9
1,224,988 - -2.0
1,225,012 - +1.2
1,225,012 - +0.8
1,225,040 - -0.9
1,225,066 + +0.5
1,225,067 - -0.4
1,225,067 - +2.4
1,225,074 + -0.3
1,225,075 - +1.3
1,225,075 - -1.7
1,225,075 - -0.5
1,225,087 + -2.1
1,225,143 + -0.2
1,225,155 + -2.7
1,225,156 - +1.4
1,225,156 - -1.7
1,225,246 - +1.0
1,225,246 - -0.8
1,225,248 + +0.1
1,225,249 - +0.9
1,225,249 - -0.7
1,225,249 - -0.2
1,225,277 + +2.2
1,225,277 + +0.2
1,225,277 + +0.4
1,225,278 - -0.4
1,225,278 - -0.5
1,225,278 - +1.0
1,225,278 - -0.2
1,225,283 + +0.6
1,225,283 + -1.0
1,225,283 + -1.5
1,225,283 + +1.1
1,225,284 - -1.3
1,225,286 - +1.1
1,225,314 - Echvi_1064 0.14 +2.0
1,225,314 - Echvi_1064 0.14 +0.0
1,225,316 - Echvi_1064 0.15 +2.0
1,225,335 + Echvi_1064 0.21 -0.2
1,225,391 + Echvi_1064 0.39 -1.7
1,225,392 - Echvi_1064 0.39 -0.2
1,225,392 - Echvi_1064 0.39 -1.5
1,225,395 + Echvi_1064 0.40 -1.3
1,225,395 + Echvi_1064 0.40 -1.0
1,225,413 - Echvi_1064 0.46 -0.2
1,225,424 + Echvi_1064 0.49 +0.5
1,225,424 + Echvi_1064 0.49 -1.8
1,225,424 + Echvi_1064 0.49 +0.4
1,225,434 + Echvi_1064 0.52 -0.2
1,225,521 + Echvi_1064 0.80 +0.2
1,225,521 + Echvi_1064 0.80 +0.5
1,225,521 + Echvi_1064 0.80 +0.0
1,225,521 + Echvi_1064 0.80 -1.4
1,225,522 - Echvi_1064 0.80 +0.5
1,225,565 + -0.2
1,225,565 + +1.0
1,225,566 - -1.6
1,225,571 - +2.4
1,225,571 - -0.0
1,225,667 + -0.1
1,225,696 - -0.3
1,225,697 + +0.4
1,225,698 - -1.8
1,225,699 + -2.3
1,225,699 + +1.5
1,225,699 + +0.5
1,225,699 + -2.5
1,225,699 + -0.4
1,225,700 - -1.4
1,225,700 - +0.8
1,225,700 - +0.4
1,225,700 - +0.7
1,225,703 + -0.7
1,225,703 + -0.4
1,225,703 + +0.2
1,225,703 + +3.0
1,225,704 - -0.1
1,225,715 - +0.2
1,225,717 + +0.5
1,225,717 + -0.0
1,225,792 + -1.9
1,225,802 - +0.2
1,225,821 + -0.5
1,225,821 + -1.2
1,225,822 - +0.2
1,225,822 - -1.0
1,225,836 + +1.2
1,225,837 - -2.5
1,225,841 + -1.4
1,225,842 - +1.1
1,225,843 + -0.9
1,225,846 + -1.7
1,225,847 - -0.6
1,225,847 - +2.0
1,225,849 - +0.5
1,225,873 + -1.5
1,225,873 + -1.9
1,225,873 + -0.9
1,225,873 + +0.3
1,225,873 + +0.4
1,225,874 - -0.6
1,225,882 + -1.2
1,225,882 + -0.0
1,225,882 + -0.4
1,225,882 + -0.2
1,225,883 - -1.3
1,225,883 - +0.6
1,225,883 - -0.6
1,225,905 + -0.8
1,225,906 - +0.6
1,225,909 + -1.5
1,225,910 - -1.7
1,225,910 - -0.2
1,225,912 + +0.5
1,225,913 - +0.9
1,225,913 - -0.6
1,225,934 + +1.5
1,225,934 + +0.2
1,225,934 + +0.7
1,225,935 - -1.8
1,225,935 - -0.6
1,225,935 - -1.1
1,225,975 + -0.1
1,225,975 + +0.7
1,225,975 + -1.6
1,225,976 - -1.6
1,225,999 + Echvi_1065 0.15 +0.4
1,226,063 - Echvi_1065 0.29 -0.0
1,226,069 + Echvi_1065 0.30 -0.8
1,226,069 + Echvi_1065 0.30 -1.9
1,226,070 - Echvi_1065 0.31 +1.0
1,226,073 + Echvi_1065 0.31 -0.5
1,226,074 - Echvi_1065 0.32 +0.2
1,226,074 - Echvi_1065 0.32 +0.4
1,226,095 - Echvi_1065 0.36 -0.1
1,226,095 - Echvi_1065 0.36 -0.8
1,226,188 + Echvi_1065 0.57 -2.6
1,226,331 + Echvi_1065 0.90 -1.7
1,226,331 + Echvi_1065 0.90 -1.5
1,226,331 + Echvi_1065 0.90 -0.8
1,226,332 - -0.1
1,226,332 - -0.2
1,226,333 + +1.2
1,226,382 + -1.8
1,226,383 - -0.8
1,226,426 + -0.1
1,226,426 + -1.0
1,226,426 + -1.6
1,226,426 + -0.0
1,226,427 - -1.0
1,226,443 + -0.2
1,226,444 - +0.4
1,226,514 + Echvi_1066 0.19 -1.4
1,226,514 + Echvi_1066 0.19 +2.2
1,226,514 + Echvi_1066 0.19 -0.0
1,226,514 + Echvi_1066 0.19 -1.1
1,226,515 - Echvi_1066 0.19 +0.5
1,226,553 + Echvi_1066 0.26 +0.4
1,226,553 + Echvi_1066 0.26 -0.9
1,226,553 + Echvi_1066 0.26 +0.6
1,226,553 + Echvi_1066 0.26 -3.1
1,226,554 - Echvi_1066 0.26 -0.7
1,226,570 - Echvi_1066 0.28 +0.7
1,226,570 - Echvi_1066 0.28 +1.5
1,226,617 - Echvi_1066 0.37 -1.2
1,226,643 - Echvi_1066 0.41 +1.1
1,226,682 + Echvi_1066 0.48 +3.0
1,226,705 + Echvi_1066 0.52 -0.7
1,226,706 - Echvi_1066 0.52 +0.2
1,226,710 + Echvi_1066 0.53 -0.4
1,226,710 + Echvi_1066 0.53 +0.4
1,226,711 - Echvi_1066 0.53 -0.3
1,226,711 - Echvi_1066 0.53 +0.6
1,226,711 - Echvi_1066 0.53 +1.1
1,226,711 - Echvi_1066 0.53 +0.6
1,226,711 - Echvi_1066 0.53 -0.0
1,226,711 - Echvi_1066 0.53 -1.5
1,226,711 - Echvi_1066 0.53 +0.1
1,226,716 + Echvi_1066 0.54 -0.2
1,226,716 + Echvi_1066 0.54 -0.3
1,226,767 + Echvi_1066 0.63 -0.6
1,226,767 + Echvi_1066 0.63 -0.9
1,226,768 - Echvi_1066 0.63 -0.5
1,226,768 - Echvi_1066 0.63 +0.4
1,226,775 + Echvi_1066 0.64 -1.6
1,226,799 + Echvi_1066 0.68 +0.3
1,226,799 + Echvi_1066 0.68 -0.8
1,226,799 + Echvi_1066 0.68 -0.6
1,226,799 + Echvi_1066 0.68 +0.6
1,226,799 + Echvi_1066 0.68 -1.0
1,226,800 - Echvi_1066 0.68 -0.4
1,226,800 - Echvi_1066 0.68 -0.7
1,226,800 - Echvi_1066 0.68 -1.8
1,226,822 + Echvi_1066 0.72 -0.4
1,226,822 + Echvi_1066 0.72 +0.3
1,226,823 - Echvi_1066 0.72 +0.1
1,226,823 - Echvi_1066 0.72 -1.8
1,226,823 - Echvi_1066 0.72 -0.5
1,226,859 + Echvi_1066 0.79 -1.9
1,226,860 - Echvi_1066 0.79 +1.4
1,226,860 - Echvi_1066 0.79 +0.2
1,226,860 - Echvi_1066 0.79 +0.0
1,226,882 - Echvi_1066 0.83 +1.6
1,226,910 + Echvi_1066 0.88 +1.5
1,226,911 - Echvi_1066 0.88 -0.0
1,226,925 + +1.1
1,226,959 + -0.3
1,226,979 + -0.4
1,226,980 - -0.8
1,226,989 - -0.5
1,227,031 - +0.4
1,227,031 - -1.1
1,227,031 - +0.6
1,227,031 - -0.3
1,227,031 - -1.2
1,227,031 - -0.5
1,227,062 + +2.2
1,227,084 + +0.2
1,227,168 + Echvi_1067 0.19 +0.9
1,227,169 - Echvi_1067 0.19 +0.8
1,227,279 - Echvi_1067 0.36 -0.7
1,227,279 - Echvi_1067 0.36 -0.9
1,227,319 + Echvi_1067 0.43 -0.8
1,227,320 + Echvi_1067 0.43 -2.4
1,227,320 - Echvi_1067 0.43 -1.6
1,227,340 + Echvi_1067 0.46 -1.1
1,227,340 + Echvi_1067 0.46 -0.5
1,227,340 + Echvi_1067 0.46 -2.5
1,227,341 - Echvi_1067 0.46 +0.3
1,227,341 - Echvi_1067 0.46 -1.3
1,227,341 - Echvi_1067 0.46 -0.0
1,227,373 + Echvi_1067 0.51 +1.0
1,227,373 + Echvi_1067 0.51 -0.8
1,227,373 + Echvi_1067 0.51 -0.4
1,227,374 - Echvi_1067 0.52 -0.1
1,227,374 - Echvi_1067 0.52 -0.0
1,227,375 + Echvi_1067 0.52 +1.8

Or see this region's nucleotide sequence