Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0884

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0884 and Echvi_0885 are separated by 3 nucleotidesEchvi_0885 and Echvi_0886 are separated by 286 nucleotides Echvi_0884: Echvi_0884 - phosphoribosylaminoimidazole carboxylase, PurK protein, at 1,013,872 to 1,015,011 _0884 Echvi_0885: Echvi_0885 - phosphoribosylaminoimidazole carboxylase, PurE protein, at 1,015,015 to 1,015,530 _0885 Echvi_0886: Echvi_0886 - hypothetical protein, at 1,015,817 to 1,016,245 _0886 Position (kb) 1013 1014 1015 1016Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1012.893 kb on + strandat 1012.894 kb on - strandat 1012.894 kb on - strandat 1012.897 kb on + strandat 1012.897 kb on + strandat 1012.897 kb on + strandat 1012.897 kb on + strandat 1012.898 kb on - strandat 1012.905 kb on + strandat 1012.910 kb on + strandat 1012.910 kb on + strandat 1012.911 kb on - strandat 1012.911 kb on - strandat 1012.959 kb on - strandat 1012.959 kb on - strandat 1012.959 kb on - strandat 1012.959 kb on - strandat 1012.964 kb on - strandat 1012.964 kb on - strandat 1012.964 kb on - strandat 1012.964 kb on - strandat 1012.964 kb on - strandat 1012.964 kb on - strandat 1012.966 kb on - strandat 1012.966 kb on - strandat 1012.966 kb on - strandat 1012.966 kb on - strandat 1012.968 kb on - strandat 1012.968 kb on - strandat 1012.968 kb on - strandat 1012.968 kb on - strandat 1012.968 kb on - strandat 1012.971 kb on - strandat 1013.003 kb on + strandat 1013.068 kb on + strandat 1013.069 kb on - strandat 1013.113 kb on + strandat 1013.476 kb on - strandat 1013.479 kb on - strandat 1013.479 kb on - strandat 1013.479 kb on - strandat 1013.479 kb on - strandat 1013.479 kb on - strandat 1013.480 kb on + strandat 1013.480 kb on + strandat 1013.481 kb on - strandat 1013.499 kb on + strandat 1013.499 kb on + strandat 1013.499 kb on + strandat 1013.510 kb on + strandat 1013.510 kb on + strandat 1013.511 kb on - strandat 1013.511 kb on - strandat 1013.596 kb on + strandat 1013.608 kb on - strandat 1013.632 kb on + strandat 1013.633 kb on - strandat 1013.692 kb on + strandat 1013.693 kb on - strandat 1013.693 kb on - strandat 1013.753 kb on + strandat 1013.753 kb on + strandat 1013.754 kb on - strandat 1013.755 kb on + strandat 1013.755 kb on + strandat 1013.755 kb on + strandat 1013.756 kb on - strandat 1013.800 kb on + strandat 1013.800 kb on + strandat 1013.800 kb on + strandat 1013.867 kb on + strandat 1015.528 kb on + strandat 1015.528 kb on + strandat 1015.547 kb on - strandat 1015.605 kb on + strandat 1015.621 kb on + strandat 1015.622 kb on - strandat 1015.642 kb on + strandat 1015.642 kb on + strandat 1015.643 kb on - strandat 1015.666 kb on + strandat 1015.666 kb on + strandat 1015.692 kb on - strandat 1015.781 kb on + strandat 1015.822 kb on + strandat 1015.838 kb on - strandat 1015.891 kb on - strand, within Echvi_0886at 1015.891 kb on - strand, within Echvi_0886at 1015.964 kb on + strand, within Echvi_0886at 1015.965 kb on - strand, within Echvi_0886at 1015.965 kb on - strand, within Echvi_0886

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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1,012,893 + +0.4
1,012,894 - -0.0
1,012,894 - -2.3
1,012,897 + +2.6
1,012,897 + -1.5
1,012,897 + +0.5
1,012,897 + -0.9
1,012,898 - -0.0
1,012,905 + +1.5
1,012,910 + -0.7
1,012,910 + +1.8
1,012,911 - -1.3
1,012,911 - -0.0
1,012,959 - +0.4
1,012,959 - +0.2
1,012,959 - +0.3
1,012,959 - +0.7
1,012,964 - -0.4
1,012,964 - +0.7
1,012,964 - -1.2
1,012,964 - -1.2
1,012,964 - -0.2
1,012,964 - -1.5
1,012,966 - -0.3
1,012,966 - +1.4
1,012,966 - -1.2
1,012,966 - -0.2
1,012,968 - -0.3
1,012,968 - +1.7
1,012,968 - -0.6
1,012,968 - -1.1
1,012,968 - -0.7
1,012,971 - -0.3
1,013,003 + -4.1
1,013,068 + -2.0
1,013,069 - +1.1
1,013,113 + +0.4
1,013,476 - +0.7
1,013,479 - -0.3
1,013,479 - +0.2
1,013,479 - -0.3
1,013,479 - +1.3
1,013,479 - -2.2
1,013,480 + -0.7
1,013,480 + -1.9
1,013,481 - +0.6
1,013,499 + -0.0
1,013,499 + -2.2
1,013,499 + +1.3
1,013,510 + -0.0
1,013,510 + -1.8
1,013,511 - +1.0
1,013,511 - +0.4
1,013,596 + +1.5
1,013,608 - +0.2
1,013,632 + -1.7
1,013,633 - -0.0
1,013,692 + -0.7
1,013,693 - +1.6
1,013,693 - +0.7
1,013,753 + +0.2
1,013,753 + +0.2
1,013,754 - +1.7
1,013,755 + -0.0
1,013,755 + +1.1
1,013,755 + -0.9
1,013,756 - +2.0
1,013,800 + +1.2
1,013,800 + -1.1
1,013,800 + -1.3
1,013,867 + +1.4
1,015,528 + -0.2
1,015,528 + -0.8
1,015,547 - +2.0
1,015,605 + -0.0
1,015,621 + +0.8
1,015,622 - +0.4
1,015,642 + +0.2
1,015,642 + -0.9
1,015,643 - -0.1
1,015,666 + -1.5
1,015,666 + -0.6
1,015,692 - -2.5
1,015,781 + +0.7
1,015,822 + -2.1
1,015,838 - -0.0
1,015,891 - Echvi_0886 0.17 -0.0
1,015,891 - Echvi_0886 0.17 +0.7
1,015,964 + Echvi_0886 0.34 -2.2
1,015,965 - Echvi_0886 0.34 +1.4
1,015,965 - Echvi_0886 0.34 -0.7

Or see this region's nucleotide sequence