Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0617 and Echvi_0618 overlap by 38 nucleotides Echvi_0618 and Echvi_0619 are separated by 77 nucleotides
Echvi_0617: Echvi_0617 - hypothetical protein, at 690,262 to 692,892
_0617
Echvi_0618: Echvi_0618 - Membrane carboxypeptidase/penicillin-binding protein, at 692,855 to 695,212
_0618
Echvi_0619: Echvi_0619 - excinuclease ABC, C subunit, at 695,290 to 697,092
_0619
Position (kb) 692
693
694
695
696 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 691.951 kb on + strand, within Echvi_0617 at 692.005 kb on + strand, within Echvi_0617 at 692.006 kb on - strand, within Echvi_0617 at 692.006 kb on - strand, within Echvi_0617 at 692.009 kb on - strand, within Echvi_0617 at 692.017 kb on + strand, within Echvi_0617 at 692.017 kb on + strand, within Echvi_0617 at 692.017 kb on + strand, within Echvi_0617 at 692.017 kb on + strand, within Echvi_0617 at 692.056 kb on + strand, within Echvi_0617 at 692.056 kb on + strand, within Echvi_0617 at 692.057 kb on - strand, within Echvi_0617 at 692.057 kb on - strand, within Echvi_0617 at 692.169 kb on + strand, within Echvi_0617 at 692.179 kb on + strand, within Echvi_0617 at 692.179 kb on + strand, within Echvi_0617 at 692.179 kb on + strand, within Echvi_0617 at 692.179 kb on + strand, within Echvi_0617 at 692.204 kb on - strand, within Echvi_0617 at 692.245 kb on + strand, within Echvi_0617 at 692.246 kb on - strand, within Echvi_0617 at 692.261 kb on + strand, within Echvi_0617 at 692.262 kb on - strand, within Echvi_0617 at 692.273 kb on + strand, within Echvi_0617 at 692.273 kb on + strand, within Echvi_0617 at 692.344 kb on + strand, within Echvi_0617 at 692.345 kb on - strand, within Echvi_0617 at 692.347 kb on - strand, within Echvi_0617 at 692.391 kb on + strand, within Echvi_0617 at 692.391 kb on + strand, within Echvi_0617 at 692.396 kb on + strand, within Echvi_0617 at 692.397 kb on - strand, within Echvi_0617 at 692.469 kb on - strand, within Echvi_0617 at 692.505 kb on + strand, within Echvi_0617 at 692.528 kb on + strand, within Echvi_0617 at 692.529 kb on - strand, within Echvi_0617 at 692.529 kb on - strand, within Echvi_0617 at 692.529 kb on - strand, within Echvi_0617 at 692.529 kb on - strand, within Echvi_0617 at 692.529 kb on - strand, within Echvi_0617 at 692.529 kb on - strand, within Echvi_0617 at 692.530 kb on + strand, within Echvi_0617 at 692.531 kb on - strand, within Echvi_0617 at 692.531 kb on - strand, within Echvi_0617 at 692.532 kb on + strand, within Echvi_0617 at 692.533 kb on - strand, within Echvi_0617 at 692.533 kb on - strand, within Echvi_0617 at 692.533 kb on - strand, within Echvi_0617 at 692.558 kb on + strand, within Echvi_0617 at 692.635 kb on - strand at 692.658 kb on - strand at 692.770 kb on + strand at 692.792 kb on + strand at 692.837 kb on + strand at 695.197 kb on + strand at 695.305 kb on + strand at 695.356 kb on + strand at 695.373 kb on + strand at 695.374 kb on - strand at 695.374 kb on - strand at 695.384 kb on - strand at 695.384 kb on - strand at 695.426 kb on - strand at 695.496 kb on + strand, within Echvi_0619 at 695.496 kb on + strand, within Echvi_0619 at 695.569 kb on - strand, within Echvi_0619 at 695.569 kb on - strand, within Echvi_0619 at 695.596 kb on + strand, within Echvi_0619 at 695.596 kb on + strand, within Echvi_0619 at 695.603 kb on - strand, within Echvi_0619 at 695.603 kb on - strand, within Echvi_0619 at 695.606 kb on + strand, within Echvi_0619 at 695.636 kb on + strand, within Echvi_0619 at 695.636 kb on + strand, within Echvi_0619 at 695.636 kb on + strand, within Echvi_0619 at 695.637 kb on - strand, within Echvi_0619 at 695.637 kb on - strand, within Echvi_0619 at 695.713 kb on - strand, within Echvi_0619 at 695.713 kb on - strand, within Echvi_0619 at 695.713 kb on - strand, within Echvi_0619 at 695.715 kb on - strand, within Echvi_0619 at 695.776 kb on - strand at 695.776 kb on - strand, within Echvi_0619 at 695.871 kb on - strand, within Echvi_0619 at 696.020 kb on - strand, within Echvi_0619 at 696.069 kb on - strand, within Echvi_0619
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 691,951 + Echvi_0617 0.64 -0.1 692,005 + Echvi_0617 0.66 +0.2 692,006 - Echvi_0617 0.66 +0.7 692,006 - Echvi_0617 0.66 +0.9 692,009 - Echvi_0617 0.66 -0.4 692,017 + Echvi_0617 0.67 +0.6 692,017 + Echvi_0617 0.67 -1.3 692,017 + Echvi_0617 0.67 -0.1 692,017 + Echvi_0617 0.67 -2.9 692,056 + Echvi_0617 0.68 +0.9 692,056 + Echvi_0617 0.68 +1.9 692,057 - Echvi_0617 0.68 -0.2 692,057 - Echvi_0617 0.68 -0.2 692,169 + Echvi_0617 0.72 +0.4 692,179 + Echvi_0617 0.73 +1.5 692,179 + Echvi_0617 0.73 +0.1 692,179 + Echvi_0617 0.73 +0.4 692,179 + Echvi_0617 0.73 +0.3 692,204 - Echvi_0617 0.74 +0.6 692,245 + Echvi_0617 0.75 +2.0 692,246 - Echvi_0617 0.75 +2.1 692,261 + Echvi_0617 0.76 +2.1 692,262 - Echvi_0617 0.76 +1.3 692,273 + Echvi_0617 0.76 -0.0 692,273 + Echvi_0617 0.76 -1.4 692,344 + Echvi_0617 0.79 +1.4 692,345 - Echvi_0617 0.79 +0.0 692,347 - Echvi_0617 0.79 +0.4 692,391 + Echvi_0617 0.81 -0.6 692,391 + Echvi_0617 0.81 -0.3 692,396 + Echvi_0617 0.81 +0.6 692,397 - Echvi_0617 0.81 +0.6 692,469 - Echvi_0617 0.84 -0.1 692,505 + Echvi_0617 0.85 -1.4 692,528 + Echvi_0617 0.86 +0.6 692,529 - Echvi_0617 0.86 -2.1 692,529 - Echvi_0617 0.86 -0.3 692,529 - Echvi_0617 0.86 -1.0 692,529 - Echvi_0617 0.86 +0.5 692,529 - Echvi_0617 0.86 +2.1 692,529 - Echvi_0617 0.86 -1.2 692,530 + Echvi_0617 0.86 -1.7 692,531 - Echvi_0617 0.86 +0.4 692,531 - Echvi_0617 0.86 -0.6 692,532 + Echvi_0617 0.86 -0.9 692,533 - Echvi_0617 0.86 -0.4 692,533 - Echvi_0617 0.86 -0.8 692,533 - Echvi_0617 0.86 +0.3 692,558 + Echvi_0617 0.87 -1.3 692,635 - +1.3 692,658 - +1.2 692,770 + -0.3 692,792 + +0.6 692,837 + -2.0 695,197 + -2.0 695,305 + -0.4 695,356 + -3.2 695,373 + -1.3 695,374 - +0.8 695,374 - +0.1 695,384 - -1.0 695,384 - +0.4 695,426 - -1.6 695,496 + Echvi_0619 0.11 +2.6 695,496 + Echvi_0619 0.11 -0.5 695,569 - Echvi_0619 0.15 +1.9 695,569 - Echvi_0619 0.15 +0.3 695,596 + Echvi_0619 0.17 -0.6 695,596 + Echvi_0619 0.17 -1.8 695,603 - Echvi_0619 0.17 -0.8 695,603 - Echvi_0619 0.17 -1.0 695,606 + Echvi_0619 0.18 +0.6 695,636 + Echvi_0619 0.19 -0.2 695,636 + Echvi_0619 0.19 -1.2 695,636 + Echvi_0619 0.19 -1.9 695,637 - Echvi_0619 0.19 +0.7 695,637 - Echvi_0619 0.19 -0.6 695,713 - Echvi_0619 0.23 -1.2 695,713 - Echvi_0619 0.23 -1.2 695,713 - Echvi_0619 0.23 -0.9 695,715 - Echvi_0619 0.24 +0.9 695,776 - +1.3 695,776 - Echvi_0619 0.27 +0.6 695,871 - Echvi_0619 0.32 +0.1 696,020 - Echvi_0619 0.40 -0.3 696,069 - Echvi_0619 0.43 +0.9
Or see this region's nucleotide sequence