Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2380

Experiment: m.b. 5-Hydroxymethylfurfural 4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2379 and B158DRAFT_2380 are separated by 178 nucleotidesB158DRAFT_2380 and B158DRAFT_2381 are separated by 65 nucleotidesB158DRAFT_2381 and B158DRAFT_2382 are separated by 69 nucleotides B158DRAFT_2379: B158DRAFT_2379 - methionyl-tRNA synthetase (EC 6.1.1.10), at 549,438 to 551,462 _2379 B158DRAFT_2380: B158DRAFT_2380 - ATPases involved in chromosome partitioning, at 551,641 to 552,729 _2380 B158DRAFT_2381: B158DRAFT_2381 - dCTP deaminase (EC 3.5.4.13), at 552,795 to 553,361 _2381 B158DRAFT_2382: B158DRAFT_2382 - hypothetical protein, at 553,431 to 553,847 _2382 Position (kb) 551 552 553Strain fitness (log2 ratio) -2 -1 0 1at 551.631 kb on + strandat 551.631 kb on + strandat 551.631 kb on + strandat 551.631 kb on + strandat 551.631 kb on + strandat 551.631 kb on + strandat 551.631 kb on + strandat 551.631 kb on + strandat 551.631 kb on + strandat 551.631 kb on + strandat 551.631 kb on + strandat 551.631 kb on + strandat 551.631 kb on + strandat 551.636 kb on + strandat 552.687 kb on + strandat 552.687 kb on + strandat 552.723 kb on + strandat 552.791 kb on + strandat 552.857 kb on + strand, within B158DRAFT_2381at 552.857 kb on + strand, within B158DRAFT_2381at 552.865 kb on - strand, within B158DRAFT_2381at 552.865 kb on - strand, within B158DRAFT_2381at 552.865 kb on - strand, within B158DRAFT_2381at 552.865 kb on - strand, within B158DRAFT_2381at 552.865 kb on - strand, within B158DRAFT_2381at 552.912 kb on + strand, within B158DRAFT_2381at 552.920 kb on - strand, within B158DRAFT_2381at 552.925 kb on + strand, within B158DRAFT_2381at 552.933 kb on - strand, within B158DRAFT_2381at 552.933 kb on - strand, within B158DRAFT_2381at 552.933 kb on - strand, within B158DRAFT_2381at 552.940 kb on + strand, within B158DRAFT_2381at 552.940 kb on + strand, within B158DRAFT_2381at 552.940 kb on + strand, within B158DRAFT_2381at 552.940 kb on + strand, within B158DRAFT_2381at 552.940 kb on + strand, within B158DRAFT_2381at 552.940 kb on + strand, within B158DRAFT_2381at 552.940 kb on + strand, within B158DRAFT_2381at 552.940 kb on + strand, within B158DRAFT_2381at 552.940 kb on + strand, within B158DRAFT_2381at 552.940 kb on + strand, within B158DRAFT_2381at 552.940 kb on + strand, within B158DRAFT_2381at 552.948 kb on - strand, within B158DRAFT_2381at 552.948 kb on - strand, within B158DRAFT_2381at 552.948 kb on - strand, within B158DRAFT_2381at 552.948 kb on - strand, within B158DRAFT_2381at 552.948 kb on - strand, within B158DRAFT_2381at 552.948 kb on - strand, within B158DRAFT_2381at 552.948 kb on - strand, within B158DRAFT_2381at 552.948 kb on - strand, within B158DRAFT_2381at 552.948 kb on - strand, within B158DRAFT_2381at 552.948 kb on - strand, within B158DRAFT_2381at 552.948 kb on - strand, within B158DRAFT_2381at 552.948 kb on - strand, within B158DRAFT_2381at 552.948 kb on - strand, within B158DRAFT_2381at 552.948 kb on - strand, within B158DRAFT_2381at 552.948 kb on - strand, within B158DRAFT_2381at 552.950 kb on + strand, within B158DRAFT_2381at 552.968 kb on + strand, within B158DRAFT_2381at 552.976 kb on - strand, within B158DRAFT_2381at 552.989 kb on + strand, within B158DRAFT_2381at 552.989 kb on + strand, within B158DRAFT_2381at 552.989 kb on + strand, within B158DRAFT_2381at 552.989 kb on + strand, within B158DRAFT_2381at 552.997 kb on - strand, within B158DRAFT_2381at 553.039 kb on + strand, within B158DRAFT_2381at 553.039 kb on + strand, within B158DRAFT_2381at 553.167 kb on + strand, within B158DRAFT_2381at 553.169 kb on + strand, within B158DRAFT_2381at 553.196 kb on - strand, within B158DRAFT_2381at 553.214 kb on + strand, within B158DRAFT_2381at 553.222 kb on - strand, within B158DRAFT_2381at 553.268 kb on + strand, within B158DRAFT_2381at 553.289 kb on + strand, within B158DRAFT_2381at 553.376 kb on - strandat 553.390 kb on + strandat 553.398 kb on - strandat 553.498 kb on - strand, within B158DRAFT_2382at 553.508 kb on - strand, within B158DRAFT_2382at 553.534 kb on + strand, within B158DRAFT_2382at 553.542 kb on - strand, within B158DRAFT_2382at 553.542 kb on - strandat 553.569 kb on + strand, within B158DRAFT_2382at 553.616 kb on - strand, within B158DRAFT_2382at 553.620 kb on + strand, within B158DRAFT_2382at 553.628 kb on - strand, within B158DRAFT_2382at 553.643 kb on + strand, within B158DRAFT_2382at 553.688 kb on + strand, within B158DRAFT_2382at 553.688 kb on + strand, within B158DRAFT_2382at 553.688 kb on + strand, within B158DRAFT_2382at 553.693 kb on + strand, within B158DRAFT_2382at 553.693 kb on + strand, within B158DRAFT_2382at 553.693 kb on + strand, within B158DRAFT_2382at 553.693 kb on + strand, within B158DRAFT_2382at 553.696 kb on - strand, within B158DRAFT_2382at 553.696 kb on - strand, within B158DRAFT_2382at 553.696 kb on - strand, within B158DRAFT_2382at 553.701 kb on - strand, within B158DRAFT_2382at 553.701 kb on - strand, within B158DRAFT_2382

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 5-Hydroxymethylfurfural 4 mM
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551,631 + -0.2
551,631 + -0.2
551,631 + -0.0
551,631 + -0.2
551,631 + -0.1
551,631 + -0.8
551,631 + -0.3
551,631 + +0.3
551,631 + +0.2
551,631 + +0.3
551,631 + +0.0
551,631 + -1.0
551,631 + +0.1
551,636 + -0.8
552,687 + +0.1
552,687 + +0.2
552,723 + -0.0
552,791 + -1.0
552,857 + B158DRAFT_2381 0.11 -1.6
552,857 + B158DRAFT_2381 0.11 -0.7
552,865 - B158DRAFT_2381 0.12 -2.3
552,865 - B158DRAFT_2381 0.12 -2.7
552,865 - B158DRAFT_2381 0.12 -0.7
552,865 - B158DRAFT_2381 0.12 -0.6
552,865 - B158DRAFT_2381 0.12 -2.4
552,912 + B158DRAFT_2381 0.21 -1.4
552,920 - B158DRAFT_2381 0.22 -2.4
552,925 + B158DRAFT_2381 0.23 -0.1
552,933 - B158DRAFT_2381 0.24 -1.6
552,933 - B158DRAFT_2381 0.24 -1.2
552,933 - B158DRAFT_2381 0.24 -1.2
552,940 + B158DRAFT_2381 0.26 -1.3
552,940 + B158DRAFT_2381 0.26 +0.2
552,940 + B158DRAFT_2381 0.26 -1.4
552,940 + B158DRAFT_2381 0.26 -2.7
552,940 + B158DRAFT_2381 0.26 -1.7
552,940 + B158DRAFT_2381 0.26 -2.2
552,940 + B158DRAFT_2381 0.26 -0.8
552,940 + B158DRAFT_2381 0.26 -1.7
552,940 + B158DRAFT_2381 0.26 -1.7
552,940 + B158DRAFT_2381 0.26 -2.4
552,940 + B158DRAFT_2381 0.26 -1.2
552,948 - B158DRAFT_2381 0.27 -0.1
552,948 - B158DRAFT_2381 0.27 -2.5
552,948 - B158DRAFT_2381 0.27 -2.7
552,948 - B158DRAFT_2381 0.27 -0.8
552,948 - B158DRAFT_2381 0.27 -1.1
552,948 - B158DRAFT_2381 0.27 -2.2
552,948 - B158DRAFT_2381 0.27 -2.0
552,948 - B158DRAFT_2381 0.27 -1.7
552,948 - B158DRAFT_2381 0.27 -2.7
552,948 - B158DRAFT_2381 0.27 -1.4
552,948 - B158DRAFT_2381 0.27 -1.7
552,948 - B158DRAFT_2381 0.27 -1.5
552,948 - B158DRAFT_2381 0.27 -1.2
552,948 - B158DRAFT_2381 0.27 -2.5
552,948 - B158DRAFT_2381 0.27 -2.7
552,950 + B158DRAFT_2381 0.27 -1.0
552,968 + B158DRAFT_2381 0.31 -1.0
552,976 - B158DRAFT_2381 0.32 -0.8
552,989 + B158DRAFT_2381 0.34 -1.4
552,989 + B158DRAFT_2381 0.34 -1.9
552,989 + B158DRAFT_2381 0.34 -1.6
552,989 + B158DRAFT_2381 0.34 -1.8
552,997 - B158DRAFT_2381 0.36 -1.1
553,039 + B158DRAFT_2381 0.43 -2.0
553,039 + B158DRAFT_2381 0.43 -2.3
553,167 + B158DRAFT_2381 0.66 -2.4
553,169 + B158DRAFT_2381 0.66 -1.6
553,196 - B158DRAFT_2381 0.71 -1.7
553,214 + B158DRAFT_2381 0.74 -1.1
553,222 - B158DRAFT_2381 0.75 -0.6
553,268 + B158DRAFT_2381 0.83 -1.8
553,289 + B158DRAFT_2381 0.87 -2.2
553,376 - -0.2
553,390 + -0.3
553,398 - -0.1
553,498 - B158DRAFT_2382 0.16 -0.4
553,508 - B158DRAFT_2382 0.18 +0.0
553,534 + B158DRAFT_2382 0.25 -0.2
553,542 - B158DRAFT_2382 0.27 -0.3
553,542 - +0.3
553,569 + B158DRAFT_2382 0.33 +0.5
553,616 - B158DRAFT_2382 0.44 -0.8
553,620 + B158DRAFT_2382 0.45 -0.4
553,628 - B158DRAFT_2382 0.47 +0.3
553,643 + B158DRAFT_2382 0.51 -0.4
553,688 + B158DRAFT_2382 0.62 +0.0
553,688 + B158DRAFT_2382 0.62 -0.1
553,688 + B158DRAFT_2382 0.62 +0.4
553,693 + B158DRAFT_2382 0.63 -0.1
553,693 + B158DRAFT_2382 0.63 -0.1
553,693 + B158DRAFT_2382 0.63 +0.1
553,693 + B158DRAFT_2382 0.63 -0.0
553,696 - B158DRAFT_2382 0.64 -0.2
553,696 - B158DRAFT_2382 0.64 -0.4
553,696 - B158DRAFT_2382 0.64 -0.2
553,701 - B158DRAFT_2382 0.65 -0.4
553,701 - B158DRAFT_2382 0.65 -0.1

Or see this region's nucleotide sequence