Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1219

Experiment: m.b. 5-Hydroxymethylfurfural 4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1217 and B158DRAFT_1218 overlap by 4 nucleotidesB158DRAFT_1218 and B158DRAFT_1219 are separated by 206 nucleotidesB158DRAFT_1219 and B158DRAFT_1220 are separated by 70 nucleotidesB158DRAFT_1220 and B158DRAFT_1221 are separated by 2 nucleotides B158DRAFT_1217: B158DRAFT_1217 - Predicted membrane protein (DUF2157)., at 1,254,542 to 1,255,873 _1217 B158DRAFT_1218: B158DRAFT_1218 - Uncharacterized membrane-anchored protein, at 1,255,870 to 1,256,433 _1218 B158DRAFT_1219: B158DRAFT_1219 - hypothetical protein, at 1,256,640 to 1,257,809 _1219 B158DRAFT_1220: B158DRAFT_1220 - FMN-binding domain., at 1,257,880 to 1,258,407 _1220 B158DRAFT_1221: B158DRAFT_1221 - hypothetical protein, at 1,258,410 to 1,259,183 _1221 Position (kb) 1256 1257 1258Strain fitness (log2 ratio) -1 0 1 2at 1255.668 kb on + strand, within B158DRAFT_1217at 1255.711 kb on - strand, within B158DRAFT_1217at 1255.749 kb on + strandat 1256.060 kb on - strand, within B158DRAFT_1218at 1256.083 kb on + strand, within B158DRAFT_1218at 1256.111 kb on - strand, within B158DRAFT_1218at 1256.118 kb on + strand, within B158DRAFT_1218at 1256.133 kb on + strand, within B158DRAFT_1218at 1256.133 kb on + strand, within B158DRAFT_1218at 1256.138 kb on + strand, within B158DRAFT_1218at 1256.141 kb on - strand, within B158DRAFT_1218at 1256.141 kb on - strand, within B158DRAFT_1218at 1256.141 kb on - strand, within B158DRAFT_1218at 1256.141 kb on - strand, within B158DRAFT_1218at 1256.141 kb on - strand, within B158DRAFT_1218at 1256.143 kb on - strand, within B158DRAFT_1218at 1256.152 kb on + strand, within B158DRAFT_1218at 1256.179 kb on + strand, within B158DRAFT_1218at 1256.184 kb on + strand, within B158DRAFT_1218at 1256.184 kb on + strand, within B158DRAFT_1218at 1256.192 kb on - strand, within B158DRAFT_1218at 1256.192 kb on - strand, within B158DRAFT_1218at 1256.212 kb on - strand, within B158DRAFT_1218at 1256.264 kb on + strand, within B158DRAFT_1218at 1256.264 kb on + strand, within B158DRAFT_1218at 1256.307 kb on - strand, within B158DRAFT_1218at 1256.330 kb on - strand, within B158DRAFT_1218at 1256.330 kb on - strand, within B158DRAFT_1218at 1256.343 kb on + strand, within B158DRAFT_1218at 1256.378 kb on + strandat 1256.379 kb on + strandat 1256.379 kb on + strandat 1256.380 kb on + strandat 1256.450 kb on - strandat 1256.460 kb on - strandat 1256.678 kb on - strandat 1256.686 kb on - strandat 1256.773 kb on + strand, within B158DRAFT_1219at 1256.773 kb on + strand, within B158DRAFT_1219at 1256.775 kb on + strand, within B158DRAFT_1219at 1256.775 kb on + strand, within B158DRAFT_1219at 1256.781 kb on - strand, within B158DRAFT_1219at 1256.783 kb on - strand, within B158DRAFT_1219at 1256.853 kb on - strand, within B158DRAFT_1219at 1256.923 kb on + strand, within B158DRAFT_1219at 1256.923 kb on + strand, within B158DRAFT_1219at 1256.928 kb on + strand, within B158DRAFT_1219at 1256.933 kb on + strand, within B158DRAFT_1219at 1256.941 kb on - strand, within B158DRAFT_1219at 1256.941 kb on - strand, within B158DRAFT_1219at 1256.971 kb on + strand, within B158DRAFT_1219at 1257.038 kb on + strand, within B158DRAFT_1219at 1257.046 kb on - strand, within B158DRAFT_1219at 1257.146 kb on - strand, within B158DRAFT_1219at 1257.190 kb on + strand, within B158DRAFT_1219at 1257.202 kb on + strand, within B158DRAFT_1219at 1257.288 kb on - strand, within B158DRAFT_1219at 1257.369 kb on + strand, within B158DRAFT_1219at 1257.371 kb on - strand, within B158DRAFT_1219at 1257.376 kb on + strand, within B158DRAFT_1219at 1257.379 kb on - strand, within B158DRAFT_1219at 1257.379 kb on - strand, within B158DRAFT_1219at 1257.387 kb on + strand, within B158DRAFT_1219at 1257.408 kb on + strand, within B158DRAFT_1219at 1257.416 kb on - strand, within B158DRAFT_1219at 1257.418 kb on + strand, within B158DRAFT_1219at 1257.458 kb on + strand, within B158DRAFT_1219at 1257.458 kb on + strand, within B158DRAFT_1219at 1257.466 kb on - strand, within B158DRAFT_1219at 1257.477 kb on + strand, within B158DRAFT_1219at 1257.485 kb on - strand, within B158DRAFT_1219at 1257.501 kb on - strand, within B158DRAFT_1219at 1257.517 kb on - strand, within B158DRAFT_1219at 1257.519 kb on + strand, within B158DRAFT_1219at 1257.546 kb on + strand, within B158DRAFT_1219at 1257.560 kb on + strand, within B158DRAFT_1219at 1257.560 kb on + strand, within B158DRAFT_1219at 1257.568 kb on - strand, within B158DRAFT_1219at 1257.568 kb on - strand, within B158DRAFT_1219at 1257.594 kb on - strand, within B158DRAFT_1219at 1257.676 kb on + strand, within B158DRAFT_1219at 1257.676 kb on + strand, within B158DRAFT_1219at 1257.731 kb on + strandat 1257.731 kb on + strandat 1257.770 kb on - strandat 1257.770 kb on - strandat 1257.778 kb on - strandat 1257.803 kb on + strandat 1257.811 kb on - strandat 1257.818 kb on - strandat 1257.861 kb on - strandat 1258.022 kb on + strand, within B158DRAFT_1220at 1258.032 kb on + strand, within B158DRAFT_1220at 1258.108 kb on - strand, within B158DRAFT_1220at 1258.163 kb on + strand, within B158DRAFT_1220at 1258.200 kb on + strand, within B158DRAFT_1220at 1258.373 kb on + strandat 1258.373 kb on + strandat 1258.394 kb on + strandat 1258.397 kb on - strandat 1258.609 kb on + strand, within B158DRAFT_1221at 1258.617 kb on - strand, within B158DRAFT_1221at 1258.750 kb on + strand, within B158DRAFT_1221at 1258.787 kb on + strand, within B158DRAFT_1221at 1258.795 kb on - strand, within B158DRAFT_1221at 1258.800 kb on - strand, within B158DRAFT_1221

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 5-Hydroxymethylfurfural 4 mM
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1,255,668 + B158DRAFT_1217 0.85 -0.1
1,255,711 - B158DRAFT_1217 0.88 -0.7
1,255,749 + +0.1
1,256,060 - B158DRAFT_1218 0.34 -0.3
1,256,083 + B158DRAFT_1218 0.38 -0.1
1,256,111 - B158DRAFT_1218 0.43 +0.3
1,256,118 + B158DRAFT_1218 0.44 -0.0
1,256,133 + B158DRAFT_1218 0.47 -0.2
1,256,133 + B158DRAFT_1218 0.47 -0.0
1,256,138 + B158DRAFT_1218 0.48 -0.1
1,256,141 - B158DRAFT_1218 0.48 -0.3
1,256,141 - B158DRAFT_1218 0.48 +0.1
1,256,141 - B158DRAFT_1218 0.48 +0.2
1,256,141 - B158DRAFT_1218 0.48 +0.2
1,256,141 - B158DRAFT_1218 0.48 +0.4
1,256,143 - B158DRAFT_1218 0.48 -0.2
1,256,152 + B158DRAFT_1218 0.50 +0.5
1,256,179 + B158DRAFT_1218 0.55 -0.1
1,256,184 + B158DRAFT_1218 0.56 -0.2
1,256,184 + B158DRAFT_1218 0.56 -0.2
1,256,192 - B158DRAFT_1218 0.57 +0.1
1,256,192 - B158DRAFT_1218 0.57 -0.5
1,256,212 - B158DRAFT_1218 0.61 -0.2
1,256,264 + B158DRAFT_1218 0.70 +0.2
1,256,264 + B158DRAFT_1218 0.70 -0.0
1,256,307 - B158DRAFT_1218 0.77 +0.2
1,256,330 - B158DRAFT_1218 0.82 -0.1
1,256,330 - B158DRAFT_1218 0.82 -0.2
1,256,343 + B158DRAFT_1218 0.84 +0.4
1,256,378 + +0.5
1,256,379 + +0.4
1,256,379 + -0.1
1,256,380 + -0.6
1,256,450 - -0.4
1,256,460 - -0.4
1,256,678 - +0.0
1,256,686 - -0.0
1,256,773 + B158DRAFT_1219 0.11 +2.0
1,256,773 + B158DRAFT_1219 0.11 +0.0
1,256,775 + B158DRAFT_1219 0.12 -0.0
1,256,775 + B158DRAFT_1219 0.12 +0.1
1,256,781 - B158DRAFT_1219 0.12 -0.1
1,256,783 - B158DRAFT_1219 0.12 -0.1
1,256,853 - B158DRAFT_1219 0.18 -0.4
1,256,923 + B158DRAFT_1219 0.24 -0.7
1,256,923 + B158DRAFT_1219 0.24 -0.1
1,256,928 + B158DRAFT_1219 0.25 -0.2
1,256,933 + B158DRAFT_1219 0.25 +0.0
1,256,941 - B158DRAFT_1219 0.26 -0.1
1,256,941 - B158DRAFT_1219 0.26 -0.3
1,256,971 + B158DRAFT_1219 0.28 +0.2
1,257,038 + B158DRAFT_1219 0.34 -0.3
1,257,046 - B158DRAFT_1219 0.35 +0.1
1,257,146 - B158DRAFT_1219 0.43 -0.4
1,257,190 + B158DRAFT_1219 0.47 +0.1
1,257,202 + B158DRAFT_1219 0.48 +0.2
1,257,288 - B158DRAFT_1219 0.55 +0.2
1,257,369 + B158DRAFT_1219 0.62 +0.2
1,257,371 - B158DRAFT_1219 0.62 -0.1
1,257,376 + B158DRAFT_1219 0.63 +0.2
1,257,379 - B158DRAFT_1219 0.63 +0.2
1,257,379 - B158DRAFT_1219 0.63 -0.0
1,257,387 + B158DRAFT_1219 0.64 +0.5
1,257,408 + B158DRAFT_1219 0.66 +0.4
1,257,416 - B158DRAFT_1219 0.66 +0.3
1,257,418 + B158DRAFT_1219 0.66 -0.3
1,257,458 + B158DRAFT_1219 0.70 +0.3
1,257,458 + B158DRAFT_1219 0.70 -0.6
1,257,466 - B158DRAFT_1219 0.71 -0.1
1,257,477 + B158DRAFT_1219 0.72 -0.0
1,257,485 - B158DRAFT_1219 0.72 -0.1
1,257,501 - B158DRAFT_1219 0.74 -0.0
1,257,517 - B158DRAFT_1219 0.75 +0.2
1,257,519 + B158DRAFT_1219 0.75 +0.1
1,257,546 + B158DRAFT_1219 0.77 +0.1
1,257,560 + B158DRAFT_1219 0.79 +0.1
1,257,560 + B158DRAFT_1219 0.79 -0.0
1,257,568 - B158DRAFT_1219 0.79 +0.6
1,257,568 - B158DRAFT_1219 0.79 +0.2
1,257,594 - B158DRAFT_1219 0.82 -0.1
1,257,676 + B158DRAFT_1219 0.89 -0.2
1,257,676 + B158DRAFT_1219 0.89 -0.2
1,257,731 + -0.1
1,257,731 + -0.7
1,257,770 - +0.7
1,257,770 - -0.2
1,257,778 - -0.7
1,257,803 + -0.2
1,257,811 - +0.3
1,257,818 - -0.1
1,257,861 - -0.1
1,258,022 + B158DRAFT_1220 0.27 -0.0
1,258,032 + B158DRAFT_1220 0.29 +0.0
1,258,108 - B158DRAFT_1220 0.43 -0.4
1,258,163 + B158DRAFT_1220 0.54 -0.1
1,258,200 + B158DRAFT_1220 0.61 -0.0
1,258,373 + -0.1
1,258,373 + -0.3
1,258,394 + +0.2
1,258,397 - -0.1
1,258,609 + B158DRAFT_1221 0.26 +0.1
1,258,617 - B158DRAFT_1221 0.27 +0.0
1,258,750 + B158DRAFT_1221 0.44 -0.1
1,258,787 + B158DRAFT_1221 0.49 -0.3
1,258,795 - B158DRAFT_1221 0.50 +0.1
1,258,800 - B158DRAFT_1221 0.50 -0.2

Or see this region's nucleotide sequence