Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_811

Experiment: Cephalothin 3 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_809 and PfGW456L13_810 are separated by 237 nucleotidesPfGW456L13_810 and PfGW456L13_811 are separated by 152 nucleotidesPfGW456L13_811 and PfGW456L13_812 are separated by 151 nucleotides PfGW456L13_809 - Gamma-glutamyl-putrescine oxidase (EC1.4.3.-), at 907,757 to 909,064 _809 PfGW456L13_810 - FIG00954130: hypothetical protein, at 909,302 to 909,565 _810 PfGW456L13_811 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 909,718 to 910,206 _811 PfGW456L13_812 - D-amino acid dehydrogenase small subunit (EC 1.4.99.1), at 910,358 to 911,668 _812 Position (kb) 909 910 911Strain fitness (log2 ratio) -2 -1 0 1at 908.882 kb on + strand, within PfGW456L13_809at 908.882 kb on + strand, within PfGW456L13_809at 908.882 kb on + strand, within PfGW456L13_809at 908.882 kb on + strand, within PfGW456L13_809at 908.883 kb on - strand, within PfGW456L13_809at 908.883 kb on - strand, within PfGW456L13_809at 908.883 kb on - strand, within PfGW456L13_809at 908.883 kb on - strand, within PfGW456L13_809at 909.015 kb on + strandat 909.015 kb on + strandat 909.016 kb on - strandat 909.016 kb on - strandat 909.018 kb on + strandat 909.018 kb on + strandat 909.019 kb on - strandat 909.019 kb on - strandat 909.019 kb on - strandat 909.108 kb on + strandat 909.109 kb on - strandat 909.187 kb on + strandat 909.187 kb on + strandat 909.187 kb on + strandat 909.187 kb on + strandat 909.188 kb on - strandat 909.188 kb on - strandat 909.188 kb on - strandat 909.188 kb on - strandat 909.416 kb on + strand, within PfGW456L13_810at 909.417 kb on - strand, within PfGW456L13_810at 909.417 kb on - strand, within PfGW456L13_810at 909.417 kb on - strand, within PfGW456L13_810at 909.417 kb on - strand, within PfGW456L13_810at 909.417 kb on - strand, within PfGW456L13_810at 909.533 kb on + strand, within PfGW456L13_810at 909.533 kb on + strand, within PfGW456L13_810at 909.533 kb on + strand, within PfGW456L13_810at 909.533 kb on + strand, within PfGW456L13_810at 909.533 kb on + strand, within PfGW456L13_810at 909.534 kb on - strand, within PfGW456L13_810at 909.534 kb on - strand, within PfGW456L13_810at 909.563 kb on + strandat 909.563 kb on + strandat 909.563 kb on + strandat 909.564 kb on - strandat 909.626 kb on + strandat 909.626 kb on + strandat 909.627 kb on - strandat 909.770 kb on + strand, within PfGW456L13_811at 909.770 kb on + strand, within PfGW456L13_811at 909.866 kb on + strand, within PfGW456L13_811at 909.945 kb on + strand, within PfGW456L13_811at 909.946 kb on - strand, within PfGW456L13_811at 909.959 kb on + strand, within PfGW456L13_811at 909.993 kb on + strand, within PfGW456L13_811at 910.256 kb on + strandat 910.266 kb on + strandat 910.266 kb on + strandat 910.325 kb on - strandat 910.357 kb on + strandat 910.412 kb on + strandat 910.412 kb on + strandat 910.413 kb on - strandat 910.416 kb on - strandat 910.514 kb on + strand, within PfGW456L13_812at 910.619 kb on + strand, within PfGW456L13_812at 910.619 kb on + strand, within PfGW456L13_812at 910.771 kb on + strand, within PfGW456L13_812at 910.876 kb on + strand, within PfGW456L13_812at 911.129 kb on + strand, within PfGW456L13_812at 911.175 kb on - strand, within PfGW456L13_812

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 3 mg/ml
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908,882 + PfGW456L13_809 0.86 -0.3
908,882 + PfGW456L13_809 0.86 -0.3
908,882 + PfGW456L13_809 0.86 -0.5
908,882 + PfGW456L13_809 0.86 +0.2
908,883 - PfGW456L13_809 0.86 +0.3
908,883 - PfGW456L13_809 0.86 -0.1
908,883 - PfGW456L13_809 0.86 -0.3
908,883 - PfGW456L13_809 0.86 +0.0
909,015 + -0.7
909,015 + -0.3
909,016 - +0.1
909,016 - +0.1
909,018 + +0.5
909,018 + +0.0
909,019 - +0.3
909,019 - +0.7
909,019 - +0.8
909,108 + -0.5
909,109 - +0.7
909,187 + +0.4
909,187 + +0.0
909,187 + -0.1
909,187 + -0.1
909,188 - +0.4
909,188 - -0.3
909,188 - +0.2
909,188 - +0.6
909,416 + PfGW456L13_810 0.43 -0.6
909,417 - PfGW456L13_810 0.44 +1.6
909,417 - PfGW456L13_810 0.44 +0.5
909,417 - PfGW456L13_810 0.44 +0.6
909,417 - PfGW456L13_810 0.44 +0.4
909,417 - PfGW456L13_810 0.44 -0.4
909,533 + PfGW456L13_810 0.88 +0.2
909,533 + PfGW456L13_810 0.88 -1.8
909,533 + PfGW456L13_810 0.88 +0.2
909,533 + PfGW456L13_810 0.88 -0.6
909,533 + PfGW456L13_810 0.88 -0.5
909,534 - PfGW456L13_810 0.88 -0.8
909,534 - PfGW456L13_810 0.88 +0.1
909,563 + +0.6
909,563 + -0.5
909,563 + -1.0
909,564 - -0.6
909,626 + +0.1
909,626 + +0.5
909,627 - -2.4
909,770 + PfGW456L13_811 0.11 +0.1
909,770 + PfGW456L13_811 0.11 -2.1
909,866 + PfGW456L13_811 0.30 -0.9
909,945 + PfGW456L13_811 0.46 -1.3
909,946 - PfGW456L13_811 0.47 +1.2
909,959 + PfGW456L13_811 0.49 -0.0
909,993 + PfGW456L13_811 0.56 -0.7
910,256 + +0.6
910,266 + -0.2
910,266 + +0.9
910,325 - -0.4
910,357 + +1.5
910,412 + +1.2
910,412 + +1.6
910,413 - +0.2
910,416 - -0.8
910,514 + PfGW456L13_812 0.12 +0.2
910,619 + PfGW456L13_812 0.20 +1.0
910,619 + PfGW456L13_812 0.20 +0.6
910,771 + PfGW456L13_812 0.32 +0.2
910,876 + PfGW456L13_812 0.40 -0.4
911,129 + PfGW456L13_812 0.59 -1.2
911,175 - PfGW456L13_812 0.62 +0.2

Or see this region's nucleotide sequence