Experiment: Cephalothin 3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_589 and PfGW456L13_590 are separated by 14 nucleotides PfGW456L13_590 and PfGW456L13_591 are separated by 199 nucleotides PfGW456L13_591 and PfGW456L13_592 are separated by 45 nucleotides PfGW456L13_592 and PfGW456L13_593 are separated by 365 nucleotides
PfGW456L13_589 - Endonuclease/exonuclease/phosphatase family protein, at 683,160 to 684,038
_589
PfGW456L13_590 - Periplasmic thiol:disulfide interchange protein DsbA, at 684,053 to 684,694
_590
PfGW456L13_591 - Cytochrome c4, at 684,894 to 685,523
_591
PfGW456L13_592 - Cytochrome c5, at 685,569 to 685,685
_592
PfGW456L13_593 - GTP-binding protein EngB, at 686,051 to 686,695
_593
Position (kb) 684
685
686 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 684.024 kb on - strand at 684.054 kb on + strand at 684.054 kb on + strand at 684.054 kb on + strand at 684.055 kb on - strand at 684.055 kb on - strand at 684.282 kb on - strand, within PfGW456L13_590 at 684.699 kb on + strand at 684.700 kb on - strand at 684.700 kb on - strand at 684.767 kb on + strand at 684.767 kb on + strand at 684.767 kb on + strand at 684.767 kb on + strand at 684.768 kb on - strand at 684.768 kb on - strand at 684.768 kb on - strand at 684.768 kb on - strand at 684.816 kb on + strand at 684.816 kb on + strand at 684.816 kb on + strand at 684.816 kb on + strand at 684.816 kb on + strand at 684.817 kb on - strand at 684.817 kb on - strand at 684.817 kb on - strand at 684.817 kb on - strand at 684.818 kb on + strand at 684.819 kb on - strand at 684.819 kb on - strand at 684.819 kb on - strand at 684.819 kb on - strand at 684.835 kb on + strand at 684.835 kb on + strand at 684.895 kb on + strand at 684.896 kb on - strand at 684.913 kb on + strand at 684.914 kb on - strand at 685.039 kb on + strand, within PfGW456L13_591 at 685.040 kb on - strand, within PfGW456L13_591 at 685.040 kb on - strand, within PfGW456L13_591 at 685.040 kb on - strand, within PfGW456L13_591 at 685.222 kb on + strand, within PfGW456L13_591 at 685.331 kb on - strand, within PfGW456L13_591 at 685.449 kb on + strand, within PfGW456L13_591 at 685.449 kb on + strand, within PfGW456L13_591 at 685.449 kb on + strand, within PfGW456L13_591 at 685.450 kb on - strand, within PfGW456L13_591 at 685.450 kb on - strand, within PfGW456L13_591 at 685.529 kb on - strand at 685.537 kb on + strand at 685.537 kb on + strand at 685.538 kb on - strand at 685.538 kb on - strand at 685.538 kb on - strand at 685.544 kb on - strand at 685.550 kb on + strand at 685.557 kb on + strand at 685.557 kb on + strand at 685.558 kb on - strand at 685.570 kb on + strand at 685.685 kb on + strand at 685.685 kb on + strand at 685.686 kb on - strand at 685.686 kb on - strand at 685.780 kb on + strand at 685.780 kb on + strand at 685.780 kb on + strand at 685.780 kb on + strand at 685.781 kb on - strand at 685.781 kb on - strand at 685.781 kb on - strand at 685.781 kb on - strand at 685.781 kb on - strand at 685.781 kb on - strand at 685.830 kb on + strand at 685.830 kb on + strand at 685.830 kb on + strand at 685.830 kb on + strand at 685.830 kb on + strand at 685.830 kb on + strand at 685.830 kb on + strand at 685.830 kb on + strand at 685.830 kb on + strand at 685.830 kb on + strand at 685.830 kb on + strand at 685.831 kb on - strand at 685.831 kb on - strand at 685.831 kb on - strand at 685.831 kb on - strand at 685.831 kb on - strand at 685.831 kb on - strand at 685.842 kb on + strand at 685.842 kb on + strand at 685.843 kb on - strand at 685.860 kb on - strand at 685.897 kb on + strand at 685.898 kb on - strand at 685.938 kb on + strand at 685.938 kb on + strand at 685.938 kb on + strand at 685.939 kb on - strand at 685.939 kb on - strand at 685.974 kb on + strand at 685.974 kb on + strand at 685.974 kb on + strand at 685.974 kb on + strand at 685.974 kb on + strand at 685.974 kb on + strand at 685.974 kb on + strand at 685.974 kb on + strand at 685.974 kb on + strand at 685.974 kb on + strand at 685.974 kb on + strand at 685.974 kb on + strand at 685.974 kb on + strand at 685.975 kb on - strand at 685.975 kb on - strand at 685.975 kb on - strand at 685.975 kb on - strand at 685.975 kb on - strand at 685.975 kb on - strand at 685.975 kb on - strand at 685.975 kb on - strand at 685.976 kb on + strand at 685.976 kb on + strand at 685.976 kb on + strand at 685.976 kb on + strand at 685.976 kb on + strand at 685.976 kb on + strand at 685.976 kb on + strand at 685.976 kb on + strand at 685.976 kb on + strand at 685.976 kb on + strand at 685.976 kb on + strand at 685.976 kb on + strand at 685.976 kb on + strand at 685.976 kb on + strand at 685.976 kb on + strand at 685.976 kb on + strand at 685.977 kb on - strand at 685.977 kb on - strand at 685.977 kb on - strand at 685.977 kb on - strand at 685.977 kb on - strand at 685.977 kb on - strand at 685.977 kb on - strand at 685.977 kb on - strand at 685.977 kb on - strand at 685.977 kb on - strand at 685.977 kb on - strand at 685.977 kb on - strand at 685.977 kb on - strand at 685.977 kb on - strand at 685.977 kb on - strand at 685.977 kb on - strand at 685.977 kb on - strand at 685.978 kb on + strand at 685.978 kb on + strand at 685.978 kb on + strand at 685.978 kb on + strand at 685.978 kb on + strand at 685.978 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 3 mg/ml remove 684,024 - -0.8 684,054 + -0.3 684,054 + -0.0 684,054 + -0.4 684,055 - -0.5 684,055 - -0.4 684,282 - PfGW456L13_590 0.36 -1.3 684,699 + -0.6 684,700 - +0.6 684,700 - -0.1 684,767 + -0.9 684,767 + +0.2 684,767 + -0.7 684,767 + -0.4 684,768 - +0.9 684,768 - -0.7 684,768 - +0.2 684,768 - -0.3 684,816 + +0.5 684,816 + -0.3 684,816 + -0.4 684,816 + -0.9 684,816 + -0.5 684,817 - +0.0 684,817 - -1.1 684,817 - +2.2 684,817 - -1.7 684,818 + -0.9 684,819 - -0.8 684,819 - +0.5 684,819 - -0.5 684,819 - -1.3 684,835 + -0.3 684,835 + +0.2 684,895 + -0.5 684,896 - +0.9 684,913 + -1.4 684,914 - -1.0 685,039 + PfGW456L13_591 0.23 -1.4 685,040 - PfGW456L13_591 0.23 -0.6 685,040 - PfGW456L13_591 0.23 -1.3 685,040 - PfGW456L13_591 0.23 -1.4 685,222 + PfGW456L13_591 0.52 +0.6 685,331 - PfGW456L13_591 0.69 -0.5 685,449 + PfGW456L13_591 0.88 -0.2 685,449 + PfGW456L13_591 0.88 -0.3 685,449 + PfGW456L13_591 0.88 -1.5 685,450 - PfGW456L13_591 0.88 +1.2 685,450 - PfGW456L13_591 0.88 -3.0 685,529 - -1.1 685,537 + -1.0 685,537 + -1.6 685,538 - -2.9 685,538 - +0.3 685,538 - -0.1 685,544 - -0.4 685,550 + -3.1 685,557 + -0.8 685,557 + -1.3 685,558 - +0.2 685,570 + -2.5 685,685 + -0.9 685,685 + +0.2 685,686 - -0.3 685,686 - -0.3 685,780 + -0.2 685,780 + +0.3 685,780 + -1.4 685,780 + -2.8 685,781 - +0.4 685,781 - -0.8 685,781 - -1.9 685,781 - -0.4 685,781 - +0.2 685,781 - +0.1 685,830 + -0.8 685,830 + -1.2 685,830 + -1.0 685,830 + +0.2 685,830 + -1.6 685,830 + -0.6 685,830 + -0.9 685,830 + -1.8 685,830 + -0.9 685,830 + +0.1 685,830 + +0.1 685,831 - -0.9 685,831 - -0.0 685,831 - -0.6 685,831 - -0.2 685,831 - -0.3 685,831 - +0.3 685,842 + -0.2 685,842 + -0.1 685,843 - -0.1 685,860 - +0.4 685,897 + -0.2 685,898 - +0.4 685,938 + +0.8 685,938 + -1.4 685,938 + -0.3 685,939 - -0.1 685,939 - +2.2 685,974 + +0.4 685,974 + -0.9 685,974 + -2.7 685,974 + -2.1 685,974 + -2.1 685,974 + +1.2 685,974 + -0.7 685,974 + -0.6 685,974 + -0.2 685,974 + -1.3 685,974 + -0.8 685,974 + -2.5 685,974 + +0.3 685,975 - +0.3 685,975 - -0.7 685,975 - +0.9 685,975 - +0.0 685,975 - -1.1 685,975 - +0.5 685,975 - -0.2 685,975 - +0.4 685,976 + -0.1 685,976 + -0.8 685,976 + -1.4 685,976 + -1.8 685,976 + -0.5 685,976 + +1.6 685,976 + -1.8 685,976 + -0.3 685,976 + +0.8 685,976 + -2.5 685,976 + -0.2 685,976 + -0.4 685,976 + -1.8 685,976 + -1.0 685,976 + -1.0 685,976 + -1.7 685,977 - -0.4 685,977 - +1.0 685,977 - -1.0 685,977 - +0.4 685,977 - -0.4 685,977 - -0.4 685,977 - -0.2 685,977 - +1.2 685,977 - +1.2 685,977 - +0.2 685,977 - -0.1 685,977 - +0.0 685,977 - -0.4 685,977 - -1.1 685,977 - -0.3 685,977 - -2.3 685,977 - +0.2 685,978 + -0.1 685,978 + -0.4 685,978 + +0.5 685,978 + -1.3 685,978 + -1.0 685,978 + -0.2
Or see this region's nucleotide sequence