Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_5048

Experiment: Cephalothin 3 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_5047 and PfGW456L13_5048 are separated by 97 nucleotidesPfGW456L13_5048 and PfGW456L13_5049 overlap by 8 nucleotides PfGW456L13_5047 - ABC transporter, ATP-binding protein, at 5,625,082 to 5,626,809 _5047 PfGW456L13_5048 - Dna binding response regulator PrrA (RegA), at 5,626,907 to 5,627,467 _5048 PfGW456L13_5049 - Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-), at 5,627,460 to 5,628,722 _5049 Position (kb) 5626 5627 5628Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5626.012 kb on - strand, within PfGW456L13_5047at 5626.012 kb on - strand, within PfGW456L13_5047at 5626.070 kb on + strand, within PfGW456L13_5047at 5626.070 kb on + strandat 5626.070 kb on + strand, within PfGW456L13_5047at 5626.071 kb on - strand, within PfGW456L13_5047at 5626.071 kb on - strand, within PfGW456L13_5047at 5626.071 kb on - strand, within PfGW456L13_5047at 5626.232 kb on + strand, within PfGW456L13_5047at 5626.233 kb on - strand, within PfGW456L13_5047at 5626.233 kb on - strand, within PfGW456L13_5047at 5626.255 kb on + strand, within PfGW456L13_5047at 5626.255 kb on + strand, within PfGW456L13_5047at 5626.264 kb on - strand, within PfGW456L13_5047at 5626.264 kb on - strand, within PfGW456L13_5047at 5626.264 kb on - strand, within PfGW456L13_5047at 5626.424 kb on + strand, within PfGW456L13_5047at 5626.424 kb on + strand, within PfGW456L13_5047at 5626.425 kb on - strand, within PfGW456L13_5047at 5626.425 kb on - strand, within PfGW456L13_5047at 5626.425 kb on - strandat 5626.427 kb on + strand, within PfGW456L13_5047at 5626.428 kb on - strand, within PfGW456L13_5047at 5626.508 kb on + strand, within PfGW456L13_5047at 5626.508 kb on + strand, within PfGW456L13_5047at 5626.509 kb on - strand, within PfGW456L13_5047at 5626.518 kb on - strand, within PfGW456L13_5047at 5626.560 kb on - strand, within PfGW456L13_5047at 5626.560 kb on - strand, within PfGW456L13_5047at 5626.560 kb on - strand, within PfGW456L13_5047at 5626.610 kb on + strand, within PfGW456L13_5047at 5626.611 kb on - strand, within PfGW456L13_5047at 5626.622 kb on + strand, within PfGW456L13_5047at 5626.622 kb on + strand, within PfGW456L13_5047at 5626.622 kb on + strand, within PfGW456L13_5047at 5626.623 kb on - strand, within PfGW456L13_5047at 5626.623 kb on - strand, within PfGW456L13_5047at 5626.651 kb on + strandat 5626.724 kb on + strandat 5626.725 kb on - strandat 5626.823 kb on + strandat 5626.852 kb on + strandat 5626.852 kb on + strandat 5626.852 kb on + strandat 5626.852 kb on + strandat 5626.852 kb on + strandat 5626.852 kb on + strandat 5626.853 kb on - strandat 5626.853 kb on - strandat 5626.853 kb on - strandat 5626.853 kb on - strandat 5626.853 kb on - strandat 5626.853 kb on - strandat 5626.853 kb on - strandat 5626.881 kb on - strandat 5626.881 kb on - strandat 5627.139 kb on + strand, within PfGW456L13_5048at 5627.140 kb on - strand, within PfGW456L13_5048at 5627.140 kb on - strand, within PfGW456L13_5048at 5627.140 kb on - strand, within PfGW456L13_5048at 5627.140 kb on - strand, within PfGW456L13_5048at 5627.140 kb on - strand, within PfGW456L13_5048at 5627.292 kb on + strand, within PfGW456L13_5048at 5627.533 kb on + strandat 5627.533 kb on + strandat 5627.534 kb on - strandat 5627.534 kb on - strandat 5627.534 kb on - strandat 5627.534 kb on - strandat 5627.534 kb on - strandat 5627.534 kb on - strandat 5627.534 kb on - strandat 5627.616 kb on - strand, within PfGW456L13_5049at 5627.837 kb on - strand, within PfGW456L13_5049at 5627.837 kb on - strand, within PfGW456L13_5049at 5627.837 kb on - strand, within PfGW456L13_5049at 5627.943 kb on + strand, within PfGW456L13_5049at 5627.966 kb on + strand, within PfGW456L13_5049at 5627.967 kb on - strand, within PfGW456L13_5049at 5628.049 kb on - strand, within PfGW456L13_5049at 5628.253 kb on + strand, within PfGW456L13_5049at 5628.253 kb on + strand, within PfGW456L13_5049at 5628.299 kb on - strand, within PfGW456L13_5049at 5628.322 kb on + strand, within PfGW456L13_5049at 5628.322 kb on + strand, within PfGW456L13_5049at 5628.322 kb on + strand, within PfGW456L13_5049at 5628.322 kb on + strand, within PfGW456L13_5049at 5628.322 kb on + strand, within PfGW456L13_5049at 5628.322 kb on + strand, within PfGW456L13_5049at 5628.323 kb on - strand, within PfGW456L13_5049at 5628.323 kb on - strand, within PfGW456L13_5049at 5628.323 kb on - strand, within PfGW456L13_5049at 5628.323 kb on - strand, within PfGW456L13_5049at 5628.323 kb on - strand, within PfGW456L13_5049at 5628.323 kb on - strand, within PfGW456L13_5049at 5628.323 kb on - strand, within PfGW456L13_5049at 5628.323 kb on - strand, within PfGW456L13_5049at 5628.336 kb on + strand, within PfGW456L13_5049at 5628.336 kb on + strand, within PfGW456L13_5049at 5628.337 kb on - strand, within PfGW456L13_5049at 5628.358 kb on + strand, within PfGW456L13_5049at 5628.403 kb on + strand, within PfGW456L13_5049at 5628.403 kb on + strand, within PfGW456L13_5049at 5628.403 kb on + strand, within PfGW456L13_5049at 5628.404 kb on - strand, within PfGW456L13_5049at 5628.404 kb on - strand, within PfGW456L13_5049at 5628.404 kb on - strand, within PfGW456L13_5049at 5628.404 kb on - strand, within PfGW456L13_5049at 5628.404 kb on - strand, within PfGW456L13_5049at 5628.404 kb on - strand, within PfGW456L13_5049at 5628.406 kb on + strand, within PfGW456L13_5049at 5628.406 kb on + strand, within PfGW456L13_5049at 5628.406 kb on + strand, within PfGW456L13_5049at 5628.406 kb on + strand, within PfGW456L13_5049at 5628.406 kb on + strand, within PfGW456L13_5049at 5628.407 kb on - strand, within PfGW456L13_5049at 5628.442 kb on + strand, within PfGW456L13_5049

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 3 mg/ml
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5,626,012 - PfGW456L13_5047 0.54 +0.1
5,626,012 - PfGW456L13_5047 0.54 +0.1
5,626,070 + PfGW456L13_5047 0.57 +0.6
5,626,070 + -0.9
5,626,070 + PfGW456L13_5047 0.57 -0.1
5,626,071 - PfGW456L13_5047 0.57 +1.4
5,626,071 - PfGW456L13_5047 0.57 +0.2
5,626,071 - PfGW456L13_5047 0.57 -1.2
5,626,232 + PfGW456L13_5047 0.67 -1.4
5,626,233 - PfGW456L13_5047 0.67 -0.1
5,626,233 - PfGW456L13_5047 0.67 -0.6
5,626,255 + PfGW456L13_5047 0.68 -0.1
5,626,255 + PfGW456L13_5047 0.68 -0.0
5,626,264 - PfGW456L13_5047 0.68 +0.4
5,626,264 - PfGW456L13_5047 0.68 -0.5
5,626,264 - PfGW456L13_5047 0.68 -0.2
5,626,424 + PfGW456L13_5047 0.78 +2.9
5,626,424 + PfGW456L13_5047 0.78 -0.3
5,626,425 - PfGW456L13_5047 0.78 -0.4
5,626,425 - PfGW456L13_5047 0.78 -0.1
5,626,425 - +0.7
5,626,427 + PfGW456L13_5047 0.78 +0.3
5,626,428 - PfGW456L13_5047 0.78 -0.8
5,626,508 + PfGW456L13_5047 0.83 -0.3
5,626,508 + PfGW456L13_5047 0.83 +0.1
5,626,509 - PfGW456L13_5047 0.83 -0.0
5,626,518 - PfGW456L13_5047 0.83 -1.5
5,626,560 - PfGW456L13_5047 0.86 -0.3
5,626,560 - PfGW456L13_5047 0.86 -0.0
5,626,560 - PfGW456L13_5047 0.86 -0.3
5,626,610 + PfGW456L13_5047 0.88 -1.5
5,626,611 - PfGW456L13_5047 0.88 +0.1
5,626,622 + PfGW456L13_5047 0.89 -0.9
5,626,622 + PfGW456L13_5047 0.89 +0.3
5,626,622 + PfGW456L13_5047 0.89 -1.3
5,626,623 - PfGW456L13_5047 0.89 -0.6
5,626,623 - PfGW456L13_5047 0.89 +0.2
5,626,651 + +0.4
5,626,724 + +0.5
5,626,725 - -0.2
5,626,823 + -0.4
5,626,852 + +0.6
5,626,852 + -0.3
5,626,852 + +0.8
5,626,852 + +0.1
5,626,852 + -0.8
5,626,852 + -0.4
5,626,853 - -0.3
5,626,853 - +1.1
5,626,853 - -0.5
5,626,853 - +0.3
5,626,853 - +0.3
5,626,853 - +0.1
5,626,853 - +0.3
5,626,881 - +0.0
5,626,881 - +0.5
5,627,139 + PfGW456L13_5048 0.41 -0.3
5,627,140 - PfGW456L13_5048 0.42 -0.7
5,627,140 - PfGW456L13_5048 0.42 +0.3
5,627,140 - PfGW456L13_5048 0.42 -1.7
5,627,140 - PfGW456L13_5048 0.42 -0.6
5,627,140 - PfGW456L13_5048 0.42 -1.0
5,627,292 + PfGW456L13_5048 0.69 -0.5
5,627,533 + +0.1
5,627,533 + -0.5
5,627,534 - +0.0
5,627,534 - -0.2
5,627,534 - -0.2
5,627,534 - -0.9
5,627,534 - -0.1
5,627,534 - -1.9
5,627,534 - +0.2
5,627,616 - PfGW456L13_5049 0.12 -0.1
5,627,837 - PfGW456L13_5049 0.30 -1.5
5,627,837 - PfGW456L13_5049 0.30 -0.4
5,627,837 - PfGW456L13_5049 0.30 -1.8
5,627,943 + PfGW456L13_5049 0.38 -1.4
5,627,966 + PfGW456L13_5049 0.40 +0.1
5,627,967 - PfGW456L13_5049 0.40 +0.3
5,628,049 - PfGW456L13_5049 0.47 -2.7
5,628,253 + PfGW456L13_5049 0.63 +0.2
5,628,253 + PfGW456L13_5049 0.63 -0.2
5,628,299 - PfGW456L13_5049 0.66 -0.6
5,628,322 + PfGW456L13_5049 0.68 +0.5
5,628,322 + PfGW456L13_5049 0.68 +0.5
5,628,322 + PfGW456L13_5049 0.68 -1.1
5,628,322 + PfGW456L13_5049 0.68 -1.9
5,628,322 + PfGW456L13_5049 0.68 +0.0
5,628,322 + PfGW456L13_5049 0.68 -2.1
5,628,323 - PfGW456L13_5049 0.68 -1.0
5,628,323 - PfGW456L13_5049 0.68 -0.4
5,628,323 - PfGW456L13_5049 0.68 +0.8
5,628,323 - PfGW456L13_5049 0.68 -0.9
5,628,323 - PfGW456L13_5049 0.68 +0.0
5,628,323 - PfGW456L13_5049 0.68 -1.0
5,628,323 - PfGW456L13_5049 0.68 +0.1
5,628,323 - PfGW456L13_5049 0.68 -0.7
5,628,336 + PfGW456L13_5049 0.69 -0.3
5,628,336 + PfGW456L13_5049 0.69 +0.0
5,628,337 - PfGW456L13_5049 0.69 -0.0
5,628,358 + PfGW456L13_5049 0.71 +0.1
5,628,403 + PfGW456L13_5049 0.75 -2.3
5,628,403 + PfGW456L13_5049 0.75 -0.1
5,628,403 + PfGW456L13_5049 0.75 -0.2
5,628,404 - PfGW456L13_5049 0.75 +0.3
5,628,404 - PfGW456L13_5049 0.75 +0.1
5,628,404 - PfGW456L13_5049 0.75 -0.3
5,628,404 - PfGW456L13_5049 0.75 +0.6
5,628,404 - PfGW456L13_5049 0.75 -0.9
5,628,404 - PfGW456L13_5049 0.75 +1.1
5,628,406 + PfGW456L13_5049 0.75 -1.6
5,628,406 + PfGW456L13_5049 0.75 +0.2
5,628,406 + PfGW456L13_5049 0.75 +0.2
5,628,406 + PfGW456L13_5049 0.75 -0.4
5,628,406 + PfGW456L13_5049 0.75 -1.0
5,628,407 - PfGW456L13_5049 0.75 -0.4
5,628,442 + PfGW456L13_5049 0.78 -2.1

Or see this region's nucleotide sequence