Experiment: Cephalothin 3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4929 and PfGW456L13_4930 are separated by 148 nucleotides PfGW456L13_4930 and PfGW456L13_4931 are separated by 63 nucleotides
PfGW456L13_4929 - hypothetical protein, at 5,505,934 to 5,507,034
_4929
PfGW456L13_4930 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 5,507,183 to 5,508,601
_4930
PfGW456L13_4931 - hypothetical protein, at 5,508,665 to 5,508,784
_4931
Position (kb) 5507
5508
5509 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5506.661 kb on + strand, within PfGW456L13_4929 at 5506.662 kb on - strand, within PfGW456L13_4929 at 5506.662 kb on - strand, within PfGW456L13_4929 at 5506.786 kb on + strand, within PfGW456L13_4929 at 5506.840 kb on + strand, within PfGW456L13_4929 at 5506.840 kb on + strand, within PfGW456L13_4929 at 5507.106 kb on + strand at 5507.106 kb on + strand at 5507.107 kb on - strand at 5507.107 kb on - strand at 5507.144 kb on + strand at 5507.144 kb on + strand at 5507.144 kb on + strand at 5507.161 kb on + strand at 5507.161 kb on + strand at 5507.423 kb on + strand, within PfGW456L13_4930 at 5507.424 kb on - strand, within PfGW456L13_4930 at 5507.424 kb on - strand, within PfGW456L13_4930 at 5507.424 kb on - strand, within PfGW456L13_4930 at 5507.654 kb on + strand, within PfGW456L13_4930 at 5507.816 kb on + strand, within PfGW456L13_4930 at 5507.816 kb on + strand, within PfGW456L13_4930 at 5507.816 kb on + strand, within PfGW456L13_4930 at 5507.816 kb on + strand, within PfGW456L13_4930 at 5507.817 kb on - strand, within PfGW456L13_4930 at 5507.939 kb on + strand, within PfGW456L13_4930 at 5507.939 kb on + strand, within PfGW456L13_4930 at 5507.939 kb on + strand, within PfGW456L13_4930 at 5507.939 kb on + strand, within PfGW456L13_4930 at 5507.939 kb on + strand, within PfGW456L13_4930 at 5507.940 kb on - strand, within PfGW456L13_4930 at 5507.940 kb on - strand, within PfGW456L13_4930 at 5507.940 kb on - strand, within PfGW456L13_4930 at 5507.940 kb on - strand, within PfGW456L13_4930 at 5507.940 kb on - strand, within PfGW456L13_4930 at 5507.940 kb on - strand, within PfGW456L13_4930 at 5507.940 kb on - strand, within PfGW456L13_4930 at 5507.940 kb on - strand, within PfGW456L13_4930 at 5507.962 kb on + strand, within PfGW456L13_4930 at 5507.963 kb on - strand, within PfGW456L13_4930 at 5508.000 kb on - strand, within PfGW456L13_4930 at 5508.119 kb on + strand, within PfGW456L13_4930 at 5508.119 kb on + strand, within PfGW456L13_4930 at 5508.119 kb on + strand, within PfGW456L13_4930 at 5508.119 kb on + strand, within PfGW456L13_4930 at 5508.119 kb on + strand, within PfGW456L13_4930 at 5508.119 kb on + strand, within PfGW456L13_4930 at 5508.119 kb on + strand, within PfGW456L13_4930 at 5508.120 kb on - strand, within PfGW456L13_4930 at 5508.120 kb on - strand, within PfGW456L13_4930 at 5508.120 kb on - strand, within PfGW456L13_4930 at 5508.120 kb on - strand, within PfGW456L13_4930 at 5508.167 kb on + strand, within PfGW456L13_4930 at 5508.167 kb on + strand, within PfGW456L13_4930 at 5508.168 kb on - strand, within PfGW456L13_4930 at 5508.168 kb on - strand, within PfGW456L13_4930 at 5508.284 kb on + strand, within PfGW456L13_4930 at 5508.284 kb on + strand, within PfGW456L13_4930 at 5508.284 kb on + strand, within PfGW456L13_4930 at 5508.284 kb on + strand, within PfGW456L13_4930 at 5508.285 kb on - strand, within PfGW456L13_4930 at 5508.285 kb on - strand, within PfGW456L13_4930 at 5508.285 kb on - strand, within PfGW456L13_4930 at 5508.320 kb on + strand, within PfGW456L13_4930 at 5508.321 kb on - strand, within PfGW456L13_4930 at 5508.321 kb on - strand, within PfGW456L13_4930 at 5508.400 kb on + strand, within PfGW456L13_4930 at 5508.400 kb on + strand, within PfGW456L13_4930 at 5508.400 kb on + strand, within PfGW456L13_4930 at 5508.400 kb on + strand, within PfGW456L13_4930 at 5508.400 kb on + strand, within PfGW456L13_4930 at 5508.400 kb on + strand, within PfGW456L13_4930 at 5508.400 kb on + strand, within PfGW456L13_4930 at 5508.400 kb on + strand, within PfGW456L13_4930 at 5508.400 kb on + strand, within PfGW456L13_4930 at 5508.400 kb on + strand, within PfGW456L13_4930 at 5508.400 kb on + strand, within PfGW456L13_4930 at 5508.400 kb on + strand, within PfGW456L13_4930 at 5508.401 kb on - strand, within PfGW456L13_4930 at 5508.401 kb on - strand at 5508.401 kb on - strand, within PfGW456L13_4930 at 5508.401 kb on - strand, within PfGW456L13_4930 at 5508.401 kb on - strand, within PfGW456L13_4930 at 5508.401 kb on - strand, within PfGW456L13_4930 at 5508.401 kb on - strand, within PfGW456L13_4930 at 5508.401 kb on - strand, within PfGW456L13_4930 at 5508.401 kb on - strand, within PfGW456L13_4930 at 5508.401 kb on - strand, within PfGW456L13_4930 at 5508.401 kb on - strand, within PfGW456L13_4930 at 5508.401 kb on - strand, within PfGW456L13_4930 at 5508.401 kb on - strand, within PfGW456L13_4930 at 5508.401 kb on - strand, within PfGW456L13_4930 at 5508.401 kb on - strand, within PfGW456L13_4930 at 5508.401 kb on - strand, within PfGW456L13_4930 at 5508.402 kb on + strand, within PfGW456L13_4930 at 5508.402 kb on + strand, within PfGW456L13_4930 at 5508.466 kb on + strand at 5508.466 kb on + strand at 5508.466 kb on + strand at 5508.466 kb on + strand at 5508.467 kb on - strand at 5508.467 kb on - strand at 5508.467 kb on - strand at 5508.471 kb on + strand at 5508.471 kb on + strand at 5508.471 kb on + strand at 5508.471 kb on + strand at 5508.472 kb on - strand at 5508.769 kb on + strand, within PfGW456L13_4931 at 5508.955 kb on - strand at 5509.029 kb on + strand at 5509.029 kb on + strand at 5509.029 kb on + strand at 5509.030 kb on - strand at 5509.030 kb on - strand at 5509.030 kb on - strand at 5509.115 kb on + strand at 5509.115 kb on + strand at 5509.116 kb on - strand at 5509.141 kb on + strand at 5509.142 kb on - strand at 5509.223 kb on - strand at 5509.273 kb on - strand at 5509.352 kb on + strand at 5509.352 kb on + strand at 5509.353 kb on - strand at 5509.353 kb on - strand at 5509.365 kb on + strand at 5509.366 kb on - strand at 5509.366 kb on - strand at 5509.368 kb on + strand at 5509.406 kb on + strand at 5509.406 kb on + strand at 5509.406 kb on + strand at 5509.406 kb on + strand at 5509.406 kb on + strand at 5509.406 kb on + strand at 5509.406 kb on + strand at 5509.406 kb on + strand at 5509.406 kb on + strand at 5509.406 kb on + strand at 5509.406 kb on + strand at 5509.406 kb on + strand at 5509.406 kb on + strand at 5509.406 kb on + strand at 5509.406 kb on + strand at 5509.406 kb on + strand at 5509.406 kb on + strand at 5509.407 kb on - strand at 5509.407 kb on - strand at 5509.407 kb on - strand at 5509.407 kb on - strand at 5509.407 kb on - strand at 5509.407 kb on - strand at 5509.407 kb on - strand at 5509.407 kb on - strand at 5509.407 kb on - strand at 5509.407 kb on - strand at 5509.407 kb on - strand at 5509.407 kb on - strand at 5509.407 kb on - strand at 5509.407 kb on - strand at 5509.407 kb on - strand at 5509.407 kb on - strand at 5509.408 kb on + strand at 5509.408 kb on + strand at 5509.408 kb on + strand at 5509.408 kb on + strand at 5509.408 kb on + strand at 5509.408 kb on + strand at 5509.408 kb on + strand at 5509.408 kb on + strand at 5509.408 kb on + strand at 5509.408 kb on + strand at 5509.408 kb on + strand at 5509.408 kb on + strand at 5509.409 kb on - strand at 5509.409 kb on - strand at 5509.409 kb on - strand at 5509.409 kb on - strand at 5509.409 kb on - strand at 5509.409 kb on - strand at 5509.409 kb on - strand at 5509.409 kb on - strand at 5509.409 kb on - strand at 5509.409 kb on - strand at 5509.409 kb on - strand at 5509.409 kb on - strand at 5509.409 kb on - strand at 5509.409 kb on - strand at 5509.482 kb on + strand at 5509.482 kb on + strand at 5509.482 kb on + strand at 5509.483 kb on - strand at 5509.548 kb on + strand at 5509.587 kb on + strand at 5509.588 kb on - strand at 5509.588 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 3 mg/ml remove 5,506,661 + PfGW456L13_4929 0.66 -0.4 5,506,662 - PfGW456L13_4929 0.66 -0.1 5,506,662 - PfGW456L13_4929 0.66 +0.2 5,506,786 + PfGW456L13_4929 0.77 -0.2 5,506,840 + PfGW456L13_4929 0.82 -0.4 5,506,840 + PfGW456L13_4929 0.82 -0.2 5,507,106 + +0.5 5,507,106 + +0.3 5,507,107 - +0.8 5,507,107 - -1.8 5,507,144 + -0.5 5,507,144 + +0.7 5,507,144 + +0.3 5,507,161 + +0.7 5,507,161 + -0.0 5,507,423 + PfGW456L13_4930 0.17 +0.2 5,507,424 - PfGW456L13_4930 0.17 -0.7 5,507,424 - PfGW456L13_4930 0.17 +0.3 5,507,424 - PfGW456L13_4930 0.17 +1.4 5,507,654 + PfGW456L13_4930 0.33 +0.1 5,507,816 + PfGW456L13_4930 0.45 -0.3 5,507,816 + PfGW456L13_4930 0.45 +0.8 5,507,816 + PfGW456L13_4930 0.45 +0.8 5,507,816 + PfGW456L13_4930 0.45 +0.4 5,507,817 - PfGW456L13_4930 0.45 +2.4 5,507,939 + PfGW456L13_4930 0.53 +0.5 5,507,939 + PfGW456L13_4930 0.53 -0.1 5,507,939 + PfGW456L13_4930 0.53 +0.2 5,507,939 + PfGW456L13_4930 0.53 +0.2 5,507,939 + PfGW456L13_4930 0.53 +0.1 5,507,940 - PfGW456L13_4930 0.53 -0.2 5,507,940 - PfGW456L13_4930 0.53 +0.4 5,507,940 - PfGW456L13_4930 0.53 +0.9 5,507,940 - PfGW456L13_4930 0.53 -1.0 5,507,940 - PfGW456L13_4930 0.53 +0.4 5,507,940 - PfGW456L13_4930 0.53 +0.3 5,507,940 - PfGW456L13_4930 0.53 -0.1 5,507,940 - PfGW456L13_4930 0.53 +0.8 5,507,962 + PfGW456L13_4930 0.55 -2.2 5,507,963 - PfGW456L13_4930 0.55 +0.2 5,508,000 - PfGW456L13_4930 0.58 -0.5 5,508,119 + PfGW456L13_4930 0.66 -0.3 5,508,119 + PfGW456L13_4930 0.66 +0.8 5,508,119 + PfGW456L13_4930 0.66 +0.4 5,508,119 + PfGW456L13_4930 0.66 +0.4 5,508,119 + PfGW456L13_4930 0.66 +0.3 5,508,119 + PfGW456L13_4930 0.66 -0.4 5,508,119 + PfGW456L13_4930 0.66 +0.3 5,508,120 - PfGW456L13_4930 0.66 +0.7 5,508,120 - PfGW456L13_4930 0.66 -0.4 5,508,120 - PfGW456L13_4930 0.66 -0.4 5,508,120 - PfGW456L13_4930 0.66 -1.1 5,508,167 + PfGW456L13_4930 0.69 -0.1 5,508,167 + PfGW456L13_4930 0.69 +0.1 5,508,168 - PfGW456L13_4930 0.69 -0.0 5,508,168 - PfGW456L13_4930 0.69 +0.2 5,508,284 + PfGW456L13_4930 0.78 -0.4 5,508,284 + PfGW456L13_4930 0.78 +0.1 5,508,284 + PfGW456L13_4930 0.78 +0.1 5,508,284 + PfGW456L13_4930 0.78 +0.1 5,508,285 - PfGW456L13_4930 0.78 +1.1 5,508,285 - PfGW456L13_4930 0.78 +0.5 5,508,285 - PfGW456L13_4930 0.78 -0.6 5,508,320 + PfGW456L13_4930 0.80 -0.4 5,508,321 - PfGW456L13_4930 0.80 +0.2 5,508,321 - PfGW456L13_4930 0.80 +0.4 5,508,400 + PfGW456L13_4930 0.86 -0.4 5,508,400 + PfGW456L13_4930 0.86 +1.1 5,508,400 + PfGW456L13_4930 0.86 -1.3 5,508,400 + PfGW456L13_4930 0.86 +0.1 5,508,400 + PfGW456L13_4930 0.86 +0.1 5,508,400 + PfGW456L13_4930 0.86 +1.4 5,508,400 + PfGW456L13_4930 0.86 -0.4 5,508,400 + PfGW456L13_4930 0.86 +0.2 5,508,400 + PfGW456L13_4930 0.86 +2.1 5,508,400 + PfGW456L13_4930 0.86 -0.0 5,508,400 + PfGW456L13_4930 0.86 -0.2 5,508,400 + PfGW456L13_4930 0.86 +0.3 5,508,401 - PfGW456L13_4930 0.86 +0.3 5,508,401 - +1.6 5,508,401 - PfGW456L13_4930 0.86 -0.1 5,508,401 - PfGW456L13_4930 0.86 +0.4 5,508,401 - PfGW456L13_4930 0.86 +0.1 5,508,401 - PfGW456L13_4930 0.86 +0.4 5,508,401 - PfGW456L13_4930 0.86 +0.3 5,508,401 - PfGW456L13_4930 0.86 +0.3 5,508,401 - PfGW456L13_4930 0.86 -0.1 5,508,401 - PfGW456L13_4930 0.86 +0.1 5,508,401 - PfGW456L13_4930 0.86 +0.5 5,508,401 - PfGW456L13_4930 0.86 +0.8 5,508,401 - PfGW456L13_4930 0.86 +0.7 5,508,401 - PfGW456L13_4930 0.86 +0.3 5,508,401 - PfGW456L13_4930 0.86 -1.9 5,508,401 - PfGW456L13_4930 0.86 -2.3 5,508,402 + PfGW456L13_4930 0.86 +0.8 5,508,402 + PfGW456L13_4930 0.86 +0.1 5,508,466 + -0.3 5,508,466 + +0.2 5,508,466 + +0.3 5,508,466 + +0.2 5,508,467 - -0.2 5,508,467 - +0.1 5,508,467 - -2.1 5,508,471 + +0.6 5,508,471 + -0.2 5,508,471 + -0.1 5,508,471 + +0.4 5,508,472 - +0.7 5,508,769 + PfGW456L13_4931 0.87 -0.8 5,508,955 - -1.1 5,509,029 + +0.4 5,509,029 + +0.7 5,509,029 + -1.2 5,509,030 - +0.4 5,509,030 - +0.3 5,509,030 - -0.4 5,509,115 + -0.6 5,509,115 + +1.1 5,509,116 - +0.9 5,509,141 + -0.5 5,509,142 - +0.1 5,509,223 - +0.1 5,509,273 - +0.5 5,509,352 + -1.8 5,509,352 + -1.3 5,509,353 - +0.7 5,509,353 - -0.7 5,509,365 + +0.2 5,509,366 - +0.0 5,509,366 - +0.6 5,509,368 + +1.5 5,509,406 + +0.5 5,509,406 + -2.0 5,509,406 + -0.3 5,509,406 + -1.4 5,509,406 + -0.2 5,509,406 + -0.0 5,509,406 + -1.3 5,509,406 + +0.6 5,509,406 + -0.5 5,509,406 + +1.3 5,509,406 + +0.6 5,509,406 + +0.1 5,509,406 + +0.2 5,509,406 + +0.1 5,509,406 + +1.5 5,509,406 + +0.5 5,509,406 + +0.5 5,509,407 - -0.1 5,509,407 - +0.5 5,509,407 - +0.2 5,509,407 - -0.7 5,509,407 - +0.1 5,509,407 - +0.2 5,509,407 - +1.0 5,509,407 - -0.7 5,509,407 - -0.2 5,509,407 - -1.1 5,509,407 - -1.3 5,509,407 - +0.1 5,509,407 - -1.3 5,509,407 - +0.8 5,509,407 - -0.2 5,509,407 - -0.8 5,509,408 + -0.0 5,509,408 + +0.4 5,509,408 + -0.5 5,509,408 + -0.8 5,509,408 + -1.4 5,509,408 + +0.6 5,509,408 + +0.7 5,509,408 + -0.7 5,509,408 + -0.9 5,509,408 + -1.8 5,509,408 + -0.3 5,509,408 + +0.5 5,509,409 - -0.4 5,509,409 - +0.2 5,509,409 - -0.4 5,509,409 - -0.9 5,509,409 - -0.7 5,509,409 - -0.2 5,509,409 - -0.3 5,509,409 - +1.4 5,509,409 - +0.7 5,509,409 - +0.7 5,509,409 - +0.6 5,509,409 - -0.5 5,509,409 - -0.8 5,509,409 - -0.5 5,509,482 + +0.3 5,509,482 + -0.0 5,509,482 + -0.0 5,509,483 - +1.4 5,509,548 + -0.8 5,509,587 + -0.1 5,509,588 - -1.4 5,509,588 - -0.8
Or see this region's nucleotide sequence