Experiment: Cephalothin 3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4897 and PfGW456L13_4898 are separated by 307 nucleotides PfGW456L13_4898 and PfGW456L13_4899 overlap by 4 nucleotides PfGW456L13_4899 and PfGW456L13_4900 overlap by 4 nucleotides PfGW456L13_4900 and PfGW456L13_4901 overlap by 4 nucleotides
PfGW456L13_4897 - Transcriptional regulator, AraC family, at 5,473,005 to 5,474,021
_4897
PfGW456L13_4898 - Inner membrane protein, at 5,474,329 to 5,475,339
_4898
PfGW456L13_4899 - Ferredoxin, 2Fe-2S, at 5,475,336 to 5,475,662
_4899
PfGW456L13_4900 - 2-hydroxychromene-2-carboxylate isomerase/DsbA-like thioredoxin domain, at 5,475,659 to 5,476,321
_4900
PfGW456L13_4901 - Transporter, MFS superfamily, at 5,476,318 to 5,477,649
_4901
Position (kb) 5474
5475
5476 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5473.438 kb on + strand, within PfGW456L13_4897 at 5473.438 kb on + strand, within PfGW456L13_4897 at 5473.438 kb on + strand, within PfGW456L13_4897 at 5473.439 kb on - strand, within PfGW456L13_4897 at 5473.439 kb on - strand, within PfGW456L13_4897 at 5473.439 kb on - strand, within PfGW456L13_4897 at 5473.486 kb on - strand, within PfGW456L13_4897 at 5473.719 kb on + strand, within PfGW456L13_4897 at 5473.719 kb on + strand, within PfGW456L13_4897 at 5473.719 kb on + strand, within PfGW456L13_4897 at 5473.720 kb on - strand, within PfGW456L13_4897 at 5473.720 kb on - strand, within PfGW456L13_4897 at 5473.720 kb on - strand, within PfGW456L13_4897 at 5473.720 kb on - strand, within PfGW456L13_4897 at 5473.720 kb on - strand, within PfGW456L13_4897 at 5473.887 kb on + strand, within PfGW456L13_4897 at 5473.887 kb on + strand, within PfGW456L13_4897 at 5473.887 kb on + strand, within PfGW456L13_4897 at 5473.887 kb on + strand, within PfGW456L13_4897 at 5473.888 kb on - strand, within PfGW456L13_4897 at 5473.888 kb on - strand, within PfGW456L13_4897 at 5473.888 kb on - strand, within PfGW456L13_4897 at 5473.921 kb on - strand at 5474.053 kb on + strand at 5474.053 kb on + strand at 5474.053 kb on + strand at 5474.053 kb on + strand at 5474.093 kb on + strand at 5474.094 kb on - strand at 5474.094 kb on - strand at 5474.128 kb on + strand at 5474.135 kb on - strand at 5474.137 kb on + strand at 5474.137 kb on + strand at 5474.197 kb on + strand at 5474.197 kb on + strand at 5474.197 kb on + strand at 5474.197 kb on + strand at 5474.197 kb on + strand at 5474.197 kb on + strand at 5474.197 kb on + strand at 5474.197 kb on + strand at 5474.198 kb on - strand at 5474.198 kb on - strand at 5474.198 kb on - strand at 5474.252 kb on - strand at 5474.305 kb on - strand at 5474.816 kb on + strand, within PfGW456L13_4898 at 5474.817 kb on - strand, within PfGW456L13_4898 at 5475.322 kb on - strand at 5475.322 kb on - strand at 5475.322 kb on - strand at 5475.368 kb on + strand at 5476.076 kb on + strand, within PfGW456L13_4900 at 5476.154 kb on + strand, within PfGW456L13_4900 at 5476.283 kb on - strand at 5476.283 kb on - strand at 5476.283 kb on - strand at 5476.303 kb on + strand at 5476.303 kb on + strand at 5476.303 kb on + strand at 5476.303 kb on + strand at 5476.304 kb on - strand at 5476.304 kb on - strand at 5476.304 kb on - strand at 5476.304 kb on - strand at 5476.304 kb on - strand at 5476.304 kb on - strand at 5476.304 kb on - strand at 5476.308 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 3 mg/ml remove 5,473,438 + PfGW456L13_4897 0.43 +1.0 5,473,438 + PfGW456L13_4897 0.43 -0.2 5,473,438 + PfGW456L13_4897 0.43 -1.1 5,473,439 - PfGW456L13_4897 0.43 +0.0 5,473,439 - PfGW456L13_4897 0.43 -0.4 5,473,439 - PfGW456L13_4897 0.43 -0.8 5,473,486 - PfGW456L13_4897 0.47 -1.7 5,473,719 + PfGW456L13_4897 0.70 -0.2 5,473,719 + PfGW456L13_4897 0.70 +0.0 5,473,719 + PfGW456L13_4897 0.70 +0.1 5,473,720 - PfGW456L13_4897 0.70 -0.9 5,473,720 - PfGW456L13_4897 0.70 -0.8 5,473,720 - PfGW456L13_4897 0.70 -0.2 5,473,720 - PfGW456L13_4897 0.70 +0.5 5,473,720 - PfGW456L13_4897 0.70 +0.0 5,473,887 + PfGW456L13_4897 0.87 -0.9 5,473,887 + PfGW456L13_4897 0.87 -0.2 5,473,887 + PfGW456L13_4897 0.87 +0.0 5,473,887 + PfGW456L13_4897 0.87 +0.8 5,473,888 - PfGW456L13_4897 0.87 -0.3 5,473,888 - PfGW456L13_4897 0.87 +0.8 5,473,888 - PfGW456L13_4897 0.87 +0.2 5,473,921 - -0.3 5,474,053 + +0.3 5,474,053 + +0.0 5,474,053 + -0.0 5,474,053 + +0.0 5,474,093 + -0.1 5,474,094 - +0.2 5,474,094 - -0.4 5,474,128 + +2.9 5,474,135 - +0.9 5,474,137 + -0.4 5,474,137 + +0.1 5,474,197 + +2.0 5,474,197 + -0.1 5,474,197 + -0.4 5,474,197 + +0.3 5,474,197 + -1.5 5,474,197 + +0.2 5,474,197 + -0.2 5,474,197 + +0.2 5,474,198 - -0.2 5,474,198 - -2.0 5,474,198 - -1.9 5,474,252 - -0.4 5,474,305 - -2.6 5,474,816 + PfGW456L13_4898 0.48 -0.3 5,474,817 - PfGW456L13_4898 0.48 -0.7 5,475,322 - -1.8 5,475,322 - -0.5 5,475,322 - -0.0 5,475,368 + -2.5 5,476,076 + PfGW456L13_4900 0.63 +0.9 5,476,154 + PfGW456L13_4900 0.75 -0.5 5,476,283 - -0.0 5,476,283 - -0.4 5,476,283 - -0.7 5,476,303 + +0.1 5,476,303 + -1.1 5,476,303 + -0.2 5,476,303 + +0.0 5,476,304 - -0.3 5,476,304 - +0.6 5,476,304 - -2.4 5,476,304 - +0.6 5,476,304 - +0.6 5,476,304 - +0.8 5,476,304 - -0.1 5,476,308 - -0.5
Or see this region's nucleotide sequence