Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4863

Experiment: Cephalothin 3 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4862 and PfGW456L13_4863 are separated by 3 nucleotidesPfGW456L13_4863 and PfGW456L13_4864 overlap by 1 nucleotidesPfGW456L13_4864 and PfGW456L13_4865 are separated by 16 nucleotides PfGW456L13_4862 - 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1), at 5,429,009 to 5,430,118 _4862 PfGW456L13_4863 - FIG021952: putative membrane protein, at 5,430,122 to 5,431,156 _4863 PfGW456L13_4864 - Type IV pilus biogenesis protein PilF, at 5,431,156 to 5,431,914 _4864 PfGW456L13_4865 - Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-), at 5,431,931 to 5,433,073 _4865 Position (kb) 5430 5431 5432Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5430.193 kb on - strandat 5430.702 kb on - strand, within PfGW456L13_4863at 5430.702 kb on - strand, within PfGW456L13_4863at 5430.851 kb on - strand, within PfGW456L13_4863at 5430.952 kb on - strand, within PfGW456L13_4863at 5431.173 kb on - strandat 5431.173 kb on - strandat 5431.173 kb on - strandat 5431.173 kb on - strandat 5431.182 kb on - strandat 5431.280 kb on - strand, within PfGW456L13_4864at 5431.280 kb on - strand, within PfGW456L13_4864at 5431.280 kb on - strand, within PfGW456L13_4864at 5431.280 kb on - strand, within PfGW456L13_4864at 5431.280 kb on - strand, within PfGW456L13_4864at 5431.280 kb on - strand, within PfGW456L13_4864at 5431.280 kb on - strand, within PfGW456L13_4864at 5431.285 kb on - strand, within PfGW456L13_4864at 5431.285 kb on - strand, within PfGW456L13_4864at 5431.285 kb on - strand, within PfGW456L13_4864at 5431.285 kb on - strand, within PfGW456L13_4864at 5431.285 kb on - strand, within PfGW456L13_4864at 5431.285 kb on - strand, within PfGW456L13_4864at 5431.312 kb on - strandat 5431.323 kb on - strand, within PfGW456L13_4864at 5431.323 kb on - strand, within PfGW456L13_4864at 5431.323 kb on - strand, within PfGW456L13_4864at 5431.326 kb on - strand, within PfGW456L13_4864at 5431.326 kb on - strand, within PfGW456L13_4864at 5431.344 kb on - strand, within PfGW456L13_4864at 5431.344 kb on - strand, within PfGW456L13_4864at 5431.344 kb on - strand, within PfGW456L13_4864at 5431.344 kb on - strand, within PfGW456L13_4864at 5431.344 kb on - strand, within PfGW456L13_4864at 5431.344 kb on - strand, within PfGW456L13_4864at 5431.344 kb on - strand, within PfGW456L13_4864at 5431.344 kb on - strand, within PfGW456L13_4864at 5431.344 kb on - strand, within PfGW456L13_4864at 5431.344 kb on - strand, within PfGW456L13_4864at 5431.344 kb on - strand, within PfGW456L13_4864at 5431.344 kb on - strand, within PfGW456L13_4864at 5431.344 kb on - strand, within PfGW456L13_4864at 5431.344 kb on - strand, within PfGW456L13_4864at 5431.344 kb on - strand, within PfGW456L13_4864at 5431.344 kb on - strand, within PfGW456L13_4864at 5431.542 kb on - strand, within PfGW456L13_4864at 5431.542 kb on - strand, within PfGW456L13_4864at 5431.554 kb on - strand, within PfGW456L13_4864at 5431.554 kb on - strand, within PfGW456L13_4864at 5431.554 kb on - strand, within PfGW456L13_4864at 5431.584 kb on - strand, within PfGW456L13_4864at 5431.584 kb on - strand, within PfGW456L13_4864at 5431.584 kb on - strand, within PfGW456L13_4864at 5431.584 kb on - strand, within PfGW456L13_4864at 5431.796 kb on + strand, within PfGW456L13_4864at 5431.797 kb on - strand, within PfGW456L13_4864at 5431.797 kb on - strand, within PfGW456L13_4864at 5431.797 kb on - strand, within PfGW456L13_4864at 5431.797 kb on - strand, within PfGW456L13_4864at 5431.797 kb on - strand, within PfGW456L13_4864at 5431.797 kb on - strand, within PfGW456L13_4864at 5431.797 kb on - strand, within PfGW456L13_4864at 5431.797 kb on - strand, within PfGW456L13_4864at 5431.797 kb on - strand, within PfGW456L13_4864at 5431.845 kb on - strandat 5431.845 kb on - strandat 5431.845 kb on - strandat 5431.845 kb on - strandat 5431.845 kb on - strandat 5431.914 kb on + strandat 5431.914 kb on + strandat 5431.914 kb on + strandat 5431.915 kb on - strandat 5431.915 kb on - strandat 5431.915 kb on - strandat 5431.915 kb on - strandat 5431.915 kb on - strandat 5431.915 kb on - strandat 5431.915 kb on - strandat 5431.915 kb on - strandat 5431.933 kb on - strandat 5431.933 kb on - strandat 5431.953 kb on - strandat 5431.953 kb on - strandat 5431.987 kb on + strandat 5431.987 kb on + strandat 5431.988 kb on - strandat 5431.989 kb on + strandat 5431.989 kb on + strandat 5431.990 kb on - strandat 5431.990 kb on - strandat 5431.990 kb on - strandat 5431.990 kb on - strandat 5431.990 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 3 mg/ml
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5,430,193 - +0.4
5,430,702 - PfGW456L13_4863 0.56 -1.1
5,430,702 - PfGW456L13_4863 0.56 -0.6
5,430,851 - PfGW456L13_4863 0.70 -0.6
5,430,952 - PfGW456L13_4863 0.80 -0.5
5,431,173 - +1.0
5,431,173 - +0.2
5,431,173 - +0.7
5,431,173 - +0.0
5,431,182 - +1.0
5,431,280 - PfGW456L13_4864 0.16 +1.0
5,431,280 - PfGW456L13_4864 0.16 -0.8
5,431,280 - PfGW456L13_4864 0.16 -1.5
5,431,280 - PfGW456L13_4864 0.16 -0.4
5,431,280 - PfGW456L13_4864 0.16 +0.1
5,431,280 - PfGW456L13_4864 0.16 +0.3
5,431,280 - PfGW456L13_4864 0.16 -0.5
5,431,285 - PfGW456L13_4864 0.17 -0.5
5,431,285 - PfGW456L13_4864 0.17 +0.0
5,431,285 - PfGW456L13_4864 0.17 +1.0
5,431,285 - PfGW456L13_4864 0.17 +0.0
5,431,285 - PfGW456L13_4864 0.17 +0.6
5,431,285 - PfGW456L13_4864 0.17 -0.1
5,431,312 - +0.0
5,431,323 - PfGW456L13_4864 0.22 -0.1
5,431,323 - PfGW456L13_4864 0.22 +1.2
5,431,323 - PfGW456L13_4864 0.22 +1.4
5,431,326 - PfGW456L13_4864 0.22 -1.0
5,431,326 - PfGW456L13_4864 0.22 -0.2
5,431,344 - PfGW456L13_4864 0.25 -0.6
5,431,344 - PfGW456L13_4864 0.25 +0.4
5,431,344 - PfGW456L13_4864 0.25 -0.1
5,431,344 - PfGW456L13_4864 0.25 +0.3
5,431,344 - PfGW456L13_4864 0.25 +0.8
5,431,344 - PfGW456L13_4864 0.25 -0.5
5,431,344 - PfGW456L13_4864 0.25 -0.3
5,431,344 - PfGW456L13_4864 0.25 -1.9
5,431,344 - PfGW456L13_4864 0.25 -0.2
5,431,344 - PfGW456L13_4864 0.25 -0.6
5,431,344 - PfGW456L13_4864 0.25 +1.9
5,431,344 - PfGW456L13_4864 0.25 +0.0
5,431,344 - PfGW456L13_4864 0.25 +0.6
5,431,344 - PfGW456L13_4864 0.25 -0.6
5,431,344 - PfGW456L13_4864 0.25 -0.5
5,431,344 - PfGW456L13_4864 0.25 -1.6
5,431,542 - PfGW456L13_4864 0.51 +0.9
5,431,542 - PfGW456L13_4864 0.51 -0.5
5,431,554 - PfGW456L13_4864 0.52 -1.2
5,431,554 - PfGW456L13_4864 0.52 -1.0
5,431,554 - PfGW456L13_4864 0.52 -0.8
5,431,584 - PfGW456L13_4864 0.56 +0.3
5,431,584 - PfGW456L13_4864 0.56 -0.8
5,431,584 - PfGW456L13_4864 0.56 -0.2
5,431,584 - PfGW456L13_4864 0.56 -0.1
5,431,796 + PfGW456L13_4864 0.84 +0.0
5,431,797 - PfGW456L13_4864 0.84 +0.2
5,431,797 - PfGW456L13_4864 0.84 +0.9
5,431,797 - PfGW456L13_4864 0.84 +0.6
5,431,797 - PfGW456L13_4864 0.84 +1.0
5,431,797 - PfGW456L13_4864 0.84 -0.2
5,431,797 - PfGW456L13_4864 0.84 -0.5
5,431,797 - PfGW456L13_4864 0.84 -0.6
5,431,797 - PfGW456L13_4864 0.84 +0.4
5,431,797 - PfGW456L13_4864 0.84 +0.0
5,431,845 - -0.3
5,431,845 - -0.2
5,431,845 - +0.4
5,431,845 - +0.8
5,431,845 - -0.1
5,431,914 + -0.6
5,431,914 + -3.3
5,431,914 + -1.0
5,431,915 - -0.4
5,431,915 - -1.1
5,431,915 - -0.1
5,431,915 - +1.0
5,431,915 - +0.2
5,431,915 - -0.2
5,431,915 - +0.3
5,431,915 - +0.5
5,431,933 - -0.1
5,431,933 - -0.1
5,431,953 - -0.0
5,431,953 - +0.3
5,431,987 + +0.3
5,431,987 + +1.4
5,431,988 - +1.4
5,431,989 + -1.6
5,431,989 + -1.0
5,431,990 - -1.4
5,431,990 - +0.7
5,431,990 - +0.4
5,431,990 - +0.5
5,431,990 - -0.2

Or see this region's nucleotide sequence