Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4511

Experiment: Cephalothin 3 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4510 and PfGW456L13_4511 are separated by 31 nucleotidesPfGW456L13_4511 and PfGW456L13_4512 are separated by 98 nucleotides PfGW456L13_4510 - Putative permease PerM (= YfgO), at 5,042,635 to 5,043,705 _4510 PfGW456L13_4511 - Rhodanese-like domain protein, at 5,043,737 to 5,043,976 _4511 PfGW456L13_4512 - Exported zinc metalloprotease YfgC precursor, at 5,044,075 to 5,045,508 _4512 Position (kb) 5043 5044Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5042.853 kb on - strand, within PfGW456L13_4510at 5042.867 kb on + strand, within PfGW456L13_4510at 5042.867 kb on + strandat 5042.867 kb on + strand, within PfGW456L13_4510at 5042.867 kb on + strand, within PfGW456L13_4510at 5042.867 kb on + strand, within PfGW456L13_4510at 5042.867 kb on + strand, within PfGW456L13_4510at 5042.867 kb on + strand, within PfGW456L13_4510at 5042.867 kb on + strand, within PfGW456L13_4510at 5042.867 kb on + strand, within PfGW456L13_4510at 5042.867 kb on + strand, within PfGW456L13_4510at 5042.867 kb on + strand, within PfGW456L13_4510at 5042.867 kb on + strand, within PfGW456L13_4510at 5042.867 kb on + strand, within PfGW456L13_4510at 5042.868 kb on - strand, within PfGW456L13_4510at 5042.868 kb on - strand, within PfGW456L13_4510at 5042.868 kb on - strand, within PfGW456L13_4510at 5042.868 kb on - strand, within PfGW456L13_4510at 5042.868 kb on - strand, within PfGW456L13_4510at 5042.868 kb on - strand, within PfGW456L13_4510at 5042.868 kb on - strand, within PfGW456L13_4510at 5042.868 kb on - strand, within PfGW456L13_4510at 5042.868 kb on - strand, within PfGW456L13_4510at 5042.868 kb on - strand, within PfGW456L13_4510at 5042.868 kb on - strand, within PfGW456L13_4510at 5042.869 kb on + strand, within PfGW456L13_4510at 5042.869 kb on + strand, within PfGW456L13_4510at 5042.869 kb on + strand, within PfGW456L13_4510at 5042.945 kb on + strand, within PfGW456L13_4510at 5042.945 kb on + strand, within PfGW456L13_4510at 5042.945 kb on + strand, within PfGW456L13_4510at 5042.945 kb on + strand, within PfGW456L13_4510at 5042.945 kb on + strand, within PfGW456L13_4510at 5042.945 kb on + strand, within PfGW456L13_4510at 5042.946 kb on - strand, within PfGW456L13_4510at 5042.993 kb on + strandat 5042.993 kb on + strand, within PfGW456L13_4510at 5042.994 kb on - strand, within PfGW456L13_4510at 5043.023 kb on + strand, within PfGW456L13_4510at 5043.023 kb on + strand, within PfGW456L13_4510at 5043.023 kb on + strand, within PfGW456L13_4510at 5043.024 kb on - strand, within PfGW456L13_4510at 5043.024 kb on - strand, within PfGW456L13_4510at 5043.024 kb on - strand, within PfGW456L13_4510at 5043.024 kb on - strand, within PfGW456L13_4510at 5043.024 kb on - strand, within PfGW456L13_4510at 5043.024 kb on - strand, within PfGW456L13_4510at 5043.071 kb on + strand, within PfGW456L13_4510at 5043.071 kb on + strand, within PfGW456L13_4510at 5043.071 kb on + strand, within PfGW456L13_4510at 5043.071 kb on + strand, within PfGW456L13_4510at 5043.071 kb on + strand, within PfGW456L13_4510at 5043.071 kb on + strand, within PfGW456L13_4510at 5043.072 kb on - strand, within PfGW456L13_4510at 5043.072 kb on - strand, within PfGW456L13_4510at 5043.072 kb on - strand, within PfGW456L13_4510at 5043.072 kb on - strand, within PfGW456L13_4510at 5043.072 kb on - strand, within PfGW456L13_4510at 5043.072 kb on - strand, within PfGW456L13_4510at 5043.072 kb on - strand, within PfGW456L13_4510at 5043.072 kb on - strand, within PfGW456L13_4510at 5043.212 kb on + strand, within PfGW456L13_4510at 5043.212 kb on + strand, within PfGW456L13_4510at 5043.212 kb on + strand, within PfGW456L13_4510at 5043.212 kb on + strand, within PfGW456L13_4510at 5043.212 kb on + strand, within PfGW456L13_4510at 5043.212 kb on + strand, within PfGW456L13_4510at 5043.212 kb on + strand, within PfGW456L13_4510at 5043.213 kb on - strand, within PfGW456L13_4510at 5043.213 kb on - strand, within PfGW456L13_4510at 5043.213 kb on - strand, within PfGW456L13_4510at 5043.213 kb on - strand, within PfGW456L13_4510at 5043.213 kb on - strand, within PfGW456L13_4510at 5043.316 kb on + strand, within PfGW456L13_4510at 5043.316 kb on + strand, within PfGW456L13_4510at 5043.316 kb on + strand, within PfGW456L13_4510at 5043.316 kb on + strand, within PfGW456L13_4510at 5043.316 kb on + strand, within PfGW456L13_4510at 5043.316 kb on + strand, within PfGW456L13_4510at 5043.316 kb on + strand, within PfGW456L13_4510at 5043.317 kb on - strand, within PfGW456L13_4510at 5043.317 kb on - strand, within PfGW456L13_4510at 5043.317 kb on - strand, within PfGW456L13_4510at 5043.557 kb on + strand, within PfGW456L13_4510at 5043.558 kb on - strand, within PfGW456L13_4510at 5043.709 kb on + strandat 5043.709 kb on + strandat 5043.710 kb on - strandat 5043.710 kb on - strandat 5043.716 kb on + strandat 5043.796 kb on + strand, within PfGW456L13_4511at 5043.796 kb on + strand, within PfGW456L13_4511at 5043.962 kb on + strandat 5043.962 kb on + strandat 5043.963 kb on - strandat 5044.009 kb on + strandat 5044.009 kb on + strandat 5044.010 kb on - strandat 5044.010 kb on - strandat 5044.014 kb on + strandat 5044.014 kb on + strandat 5044.014 kb on + strandat 5044.014 kb on + strandat 5044.014 kb on + strandat 5044.015 kb on - strandat 5044.015 kb on - strandat 5044.015 kb on - strandat 5044.015 kb on - strandat 5044.046 kb on + strandat 5044.046 kb on + strandat 5044.046 kb on + strandat 5044.046 kb on + strandat 5044.047 kb on - strandat 5044.047 kb on - strandat 5044.047 kb on - strandat 5044.047 kb on - strandat 5044.047 kb on - strandat 5044.195 kb on + strandat 5044.270 kb on + strand, within PfGW456L13_4512at 5044.270 kb on + strand, within PfGW456L13_4512at 5044.436 kb on - strand, within PfGW456L13_4512at 5044.436 kb on - strand, within PfGW456L13_4512at 5044.436 kb on - strand, within PfGW456L13_4512at 5044.699 kb on + strand, within PfGW456L13_4512at 5044.754 kb on - strand, within PfGW456L13_4512at 5044.892 kb on + strand, within PfGW456L13_4512at 5044.903 kb on + strand, within PfGW456L13_4512at 5044.904 kb on - strand, within PfGW456L13_4512at 5044.904 kb on - strand, within PfGW456L13_4512

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 3 mg/ml
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5,042,853 - PfGW456L13_4510 0.20 -0.7
5,042,867 + PfGW456L13_4510 0.22 -0.2
5,042,867 + +0.9
5,042,867 + PfGW456L13_4510 0.22 -0.4
5,042,867 + PfGW456L13_4510 0.22 +1.5
5,042,867 + PfGW456L13_4510 0.22 +0.3
5,042,867 + PfGW456L13_4510 0.22 -0.7
5,042,867 + PfGW456L13_4510 0.22 +0.2
5,042,867 + PfGW456L13_4510 0.22 -0.1
5,042,867 + PfGW456L13_4510 0.22 +0.7
5,042,867 + PfGW456L13_4510 0.22 -0.2
5,042,867 + PfGW456L13_4510 0.22 -1.7
5,042,867 + PfGW456L13_4510 0.22 -0.5
5,042,867 + PfGW456L13_4510 0.22 -1.1
5,042,868 - PfGW456L13_4510 0.22 +0.2
5,042,868 - PfGW456L13_4510 0.22 -0.8
5,042,868 - PfGW456L13_4510 0.22 +0.6
5,042,868 - PfGW456L13_4510 0.22 +0.6
5,042,868 - PfGW456L13_4510 0.22 +0.0
5,042,868 - PfGW456L13_4510 0.22 +0.1
5,042,868 - PfGW456L13_4510 0.22 -1.2
5,042,868 - PfGW456L13_4510 0.22 +0.2
5,042,868 - PfGW456L13_4510 0.22 -0.1
5,042,868 - PfGW456L13_4510 0.22 +0.2
5,042,868 - PfGW456L13_4510 0.22 -0.5
5,042,869 + PfGW456L13_4510 0.22 -0.7
5,042,869 + PfGW456L13_4510 0.22 -2.7
5,042,869 + PfGW456L13_4510 0.22 -0.6
5,042,945 + PfGW456L13_4510 0.29 +0.5
5,042,945 + PfGW456L13_4510 0.29 -0.2
5,042,945 + PfGW456L13_4510 0.29 +0.3
5,042,945 + PfGW456L13_4510 0.29 +0.3
5,042,945 + PfGW456L13_4510 0.29 +1.5
5,042,945 + PfGW456L13_4510 0.29 -0.5
5,042,946 - PfGW456L13_4510 0.29 -0.4
5,042,993 + -0.7
5,042,993 + PfGW456L13_4510 0.33 -3.6
5,042,994 - PfGW456L13_4510 0.34 -0.1
5,043,023 + PfGW456L13_4510 0.36 -0.2
5,043,023 + PfGW456L13_4510 0.36 +0.4
5,043,023 + PfGW456L13_4510 0.36 +0.5
5,043,024 - PfGW456L13_4510 0.36 -0.1
5,043,024 - PfGW456L13_4510 0.36 -0.2
5,043,024 - PfGW456L13_4510 0.36 +1.5
5,043,024 - PfGW456L13_4510 0.36 +1.1
5,043,024 - PfGW456L13_4510 0.36 -0.2
5,043,024 - PfGW456L13_4510 0.36 +0.4
5,043,071 + PfGW456L13_4510 0.41 -0.1
5,043,071 + PfGW456L13_4510 0.41 +0.5
5,043,071 + PfGW456L13_4510 0.41 -1.5
5,043,071 + PfGW456L13_4510 0.41 +0.3
5,043,071 + PfGW456L13_4510 0.41 -0.7
5,043,071 + PfGW456L13_4510 0.41 -0.5
5,043,072 - PfGW456L13_4510 0.41 +0.2
5,043,072 - PfGW456L13_4510 0.41 -1.5
5,043,072 - PfGW456L13_4510 0.41 -0.6
5,043,072 - PfGW456L13_4510 0.41 -0.1
5,043,072 - PfGW456L13_4510 0.41 -0.2
5,043,072 - PfGW456L13_4510 0.41 -0.5
5,043,072 - PfGW456L13_4510 0.41 +0.0
5,043,072 - PfGW456L13_4510 0.41 -0.8
5,043,212 + PfGW456L13_4510 0.54 -0.4
5,043,212 + PfGW456L13_4510 0.54 +0.1
5,043,212 + PfGW456L13_4510 0.54 +0.4
5,043,212 + PfGW456L13_4510 0.54 +0.4
5,043,212 + PfGW456L13_4510 0.54 -0.5
5,043,212 + PfGW456L13_4510 0.54 +0.2
5,043,212 + PfGW456L13_4510 0.54 -0.7
5,043,213 - PfGW456L13_4510 0.54 +0.0
5,043,213 - PfGW456L13_4510 0.54 -1.9
5,043,213 - PfGW456L13_4510 0.54 -0.6
5,043,213 - PfGW456L13_4510 0.54 -0.3
5,043,213 - PfGW456L13_4510 0.54 +1.0
5,043,316 + PfGW456L13_4510 0.64 +0.9
5,043,316 + PfGW456L13_4510 0.64 -0.3
5,043,316 + PfGW456L13_4510 0.64 -0.7
5,043,316 + PfGW456L13_4510 0.64 -0.5
5,043,316 + PfGW456L13_4510 0.64 -1.4
5,043,316 + PfGW456L13_4510 0.64 -1.5
5,043,316 + PfGW456L13_4510 0.64 +1.3
5,043,317 - PfGW456L13_4510 0.64 -0.5
5,043,317 - PfGW456L13_4510 0.64 +1.5
5,043,317 - PfGW456L13_4510 0.64 +0.4
5,043,557 + PfGW456L13_4510 0.86 -1.1
5,043,558 - PfGW456L13_4510 0.86 -0.7
5,043,709 + -0.0
5,043,709 + -0.5
5,043,710 - -0.3
5,043,710 - -0.4
5,043,716 + -0.6
5,043,796 + PfGW456L13_4511 0.25 -0.8
5,043,796 + PfGW456L13_4511 0.25 -0.3
5,043,962 + -1.3
5,043,962 + -1.9
5,043,963 - +0.0
5,044,009 + -1.8
5,044,009 + -0.4
5,044,010 - +0.9
5,044,010 - +0.5
5,044,014 + -0.1
5,044,014 + -0.7
5,044,014 + +0.0
5,044,014 + -0.2
5,044,014 + +0.2
5,044,015 - +1.1
5,044,015 - +1.9
5,044,015 - +0.5
5,044,015 - +0.2
5,044,046 + -1.1
5,044,046 + +0.9
5,044,046 + +0.4
5,044,046 + -0.1
5,044,047 - -0.4
5,044,047 - -0.3
5,044,047 - -1.1
5,044,047 - +0.7
5,044,047 - -2.0
5,044,195 + +0.8
5,044,270 + PfGW456L13_4512 0.14 -1.9
5,044,270 + PfGW456L13_4512 0.14 -0.9
5,044,436 - PfGW456L13_4512 0.25 +0.3
5,044,436 - PfGW456L13_4512 0.25 +0.1
5,044,436 - PfGW456L13_4512 0.25 -0.5
5,044,699 + PfGW456L13_4512 0.44 -1.1
5,044,754 - PfGW456L13_4512 0.47 +1.1
5,044,892 + PfGW456L13_4512 0.57 -1.4
5,044,903 + PfGW456L13_4512 0.58 -0.8
5,044,904 - PfGW456L13_4512 0.58 -0.7
5,044,904 - PfGW456L13_4512 0.58 -0.3

Or see this region's nucleotide sequence