Experiment: Cephalothin 3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_428 and PfGW456L13_429 overlap by 1 nucleotides PfGW456L13_429 and PfGW456L13_430 are separated by 234 nucleotides PfGW456L13_430 and PfGW456L13_431 are separated by 247 nucleotides
PfGW456L13_428 - Transcription accessory protein (S1 RNA-binding domain), at 492,222 to 494,546
_428
PfGW456L13_429 - Uncharacterized protein, possibly involved in aromatic compounds catabolism, at 494,546 to 494,929
_429
PfGW456L13_430 - Glutamate--cysteine ligase (EC 6.3.2.2), at 495,164 to 496,747
_430
PfGW456L13_431 - Taurine-binding periplasmic protein TauA, at 496,995 to 497,972
_431
Position (kb) 495
496
497 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 494.176 kb on + strand, within PfGW456L13_428 at 494.176 kb on + strand, within PfGW456L13_428 at 494.176 kb on + strand, within PfGW456L13_428 at 494.176 kb on + strand, within PfGW456L13_428 at 494.176 kb on + strand, within PfGW456L13_428 at 494.177 kb on - strand, within PfGW456L13_428 at 494.177 kb on - strand, within PfGW456L13_428 at 494.177 kb on - strand, within PfGW456L13_428 at 494.177 kb on - strand, within PfGW456L13_428 at 494.786 kb on + strand, within PfGW456L13_429 at 494.786 kb on + strand, within PfGW456L13_429 at 494.786 kb on + strand, within PfGW456L13_429 at 494.786 kb on + strand, within PfGW456L13_429 at 494.786 kb on + strand, within PfGW456L13_429 at 494.786 kb on + strand, within PfGW456L13_429 at 494.786 kb on + strand, within PfGW456L13_429 at 494.787 kb on - strand, within PfGW456L13_429 at 494.787 kb on - strand, within PfGW456L13_429 at 494.787 kb on - strand, within PfGW456L13_429 at 494.787 kb on - strand, within PfGW456L13_429 at 494.787 kb on - strand, within PfGW456L13_429 at 494.787 kb on - strand, within PfGW456L13_429 at 494.787 kb on - strand, within PfGW456L13_429 at 494.787 kb on - strand, within PfGW456L13_429 at 494.928 kb on - strand at 494.928 kb on - strand at 494.928 kb on - strand at 494.928 kb on - strand at 494.931 kb on + strand at 494.931 kb on + strand at 494.931 kb on + strand at 494.932 kb on - strand at 494.932 kb on - strand at 494.932 kb on - strand at 494.932 kb on - strand at 494.932 kb on - strand at 494.932 kb on - strand at 494.965 kb on + strand at 494.965 kb on + strand at 494.965 kb on + strand at 494.965 kb on + strand at 494.965 kb on + strand at 494.965 kb on + strand at 494.965 kb on + strand at 494.965 kb on + strand at 494.965 kb on + strand at 494.966 kb on - strand at 494.966 kb on - strand at 494.966 kb on - strand at 494.966 kb on - strand at 494.966 kb on - strand at 494.966 kb on - strand at 494.966 kb on - strand at 494.966 kb on - strand at 494.966 kb on - strand at 494.966 kb on - strand at 494.966 kb on - strand at 494.966 kb on - strand at 494.966 kb on - strand at 494.966 kb on - strand at 494.966 kb on - strand at 494.966 kb on - strand at 494.975 kb on - strand at 494.975 kb on - strand at 495.069 kb on - strand at 495.095 kb on + strand at 495.109 kb on + strand at 495.110 kb on - strand at 495.110 kb on - strand at 495.110 kb on - strand at 495.110 kb on - strand at 495.461 kb on + strand, within PfGW456L13_430 at 495.461 kb on + strand, within PfGW456L13_430 at 495.461 kb on + strand, within PfGW456L13_430 at 495.462 kb on - strand, within PfGW456L13_430 at 495.522 kb on - strand, within PfGW456L13_430 at 495.554 kb on + strand, within PfGW456L13_430 at 495.554 kb on + strand, within PfGW456L13_430 at 495.554 kb on + strand, within PfGW456L13_430 at 495.555 kb on - strand, within PfGW456L13_430 at 495.555 kb on - strand, within PfGW456L13_430 at 495.555 kb on - strand, within PfGW456L13_430 at 495.555 kb on - strand, within PfGW456L13_430 at 495.620 kb on + strand, within PfGW456L13_430 at 495.620 kb on + strand, within PfGW456L13_430 at 495.710 kb on + strand, within PfGW456L13_430 at 495.710 kb on + strand, within PfGW456L13_430 at 495.710 kb on + strand, within PfGW456L13_430 at 495.710 kb on + strand, within PfGW456L13_430 at 495.710 kb on + strand, within PfGW456L13_430 at 495.710 kb on + strand, within PfGW456L13_430 at 495.711 kb on - strand, within PfGW456L13_430 at 495.711 kb on - strand, within PfGW456L13_430 at 495.711 kb on - strand, within PfGW456L13_430 at 495.713 kb on - strand, within PfGW456L13_430 at 495.750 kb on + strand, within PfGW456L13_430 at 495.758 kb on + strand, within PfGW456L13_430 at 495.758 kb on + strand, within PfGW456L13_430 at 495.758 kb on + strand, within PfGW456L13_430 at 495.759 kb on - strand, within PfGW456L13_430 at 495.759 kb on - strand, within PfGW456L13_430 at 495.759 kb on - strand, within PfGW456L13_430 at 495.845 kb on + strand, within PfGW456L13_430 at 495.846 kb on - strand, within PfGW456L13_430 at 495.846 kb on - strand, within PfGW456L13_430 at 495.846 kb on - strand, within PfGW456L13_430 at 495.923 kb on + strand, within PfGW456L13_430 at 495.923 kb on + strand, within PfGW456L13_430 at 495.923 kb on + strand, within PfGW456L13_430 at 495.923 kb on + strand, within PfGW456L13_430 at 495.941 kb on + strand, within PfGW456L13_430 at 495.942 kb on - strand, within PfGW456L13_430 at 495.942 kb on - strand, within PfGW456L13_430 at 495.987 kb on - strand, within PfGW456L13_430 at 496.061 kb on + strand, within PfGW456L13_430 at 496.061 kb on + strand, within PfGW456L13_430 at 496.062 kb on - strand, within PfGW456L13_430 at 496.094 kb on + strand, within PfGW456L13_430 at 496.095 kb on - strand, within PfGW456L13_430 at 496.095 kb on - strand, within PfGW456L13_430 at 496.095 kb on - strand, within PfGW456L13_430 at 496.095 kb on - strand, within PfGW456L13_430 at 496.095 kb on - strand, within PfGW456L13_430 at 496.143 kb on - strand, within PfGW456L13_430 at 496.153 kb on - strand, within PfGW456L13_430 at 496.153 kb on - strand, within PfGW456L13_430 at 496.153 kb on - strand, within PfGW456L13_430 at 496.715 kb on + strand at 496.741 kb on + strand at 496.741 kb on + strand at 496.742 kb on - strand at 496.742 kb on - strand at 496.742 kb on - strand at 496.745 kb on + strand at 496.745 kb on + strand at 496.745 kb on + strand at 496.745 kb on + strand at 496.746 kb on - strand at 496.770 kb on + strand at 496.833 kb on + strand at 496.833 kb on + strand at 496.872 kb on - strand at 497.015 kb on - strand at 497.015 kb on - strand at 497.015 kb on - strand at 497.015 kb on - strand at 497.133 kb on + strand, within PfGW456L13_431 at 497.157 kb on - strand, within PfGW456L13_431 at 497.189 kb on + strand, within PfGW456L13_431 at 497.394 kb on - strand, within PfGW456L13_431 at 497.394 kb on - strand, within PfGW456L13_431 at 497.394 kb on - strand, within PfGW456L13_431 at 497.395 kb on + strand, within PfGW456L13_431 at 497.409 kb on + strand, within PfGW456L13_431 at 497.409 kb on + strand, within PfGW456L13_431 at 497.409 kb on + strand, within PfGW456L13_431 at 497.409 kb on + strand, within PfGW456L13_431 at 497.410 kb on - strand, within PfGW456L13_431 at 497.526 kb on + strand, within PfGW456L13_431 at 497.527 kb on - strand, within PfGW456L13_431 at 497.527 kb on - strand, within PfGW456L13_431 at 497.527 kb on - strand, within PfGW456L13_431 at 497.700 kb on + strand, within PfGW456L13_431
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 3 mg/ml remove 494,176 + PfGW456L13_428 0.84 -0.2 494,176 + PfGW456L13_428 0.84 -1.6 494,176 + PfGW456L13_428 0.84 +0.9 494,176 + PfGW456L13_428 0.84 -0.8 494,176 + PfGW456L13_428 0.84 +0.6 494,177 - PfGW456L13_428 0.84 +0.2 494,177 - PfGW456L13_428 0.84 -0.2 494,177 - PfGW456L13_428 0.84 -0.3 494,177 - PfGW456L13_428 0.84 +0.8 494,786 + PfGW456L13_429 0.62 +0.5 494,786 + PfGW456L13_429 0.62 +0.5 494,786 + PfGW456L13_429 0.62 +0.3 494,786 + PfGW456L13_429 0.62 +0.2 494,786 + PfGW456L13_429 0.62 -0.4 494,786 + PfGW456L13_429 0.62 -0.4 494,786 + PfGW456L13_429 0.62 +1.1 494,787 - PfGW456L13_429 0.63 -0.3 494,787 - PfGW456L13_429 0.63 +1.6 494,787 - PfGW456L13_429 0.63 +1.4 494,787 - PfGW456L13_429 0.63 -0.7 494,787 - PfGW456L13_429 0.63 +0.6 494,787 - PfGW456L13_429 0.63 -0.4 494,787 - PfGW456L13_429 0.63 +0.6 494,787 - PfGW456L13_429 0.63 -0.4 494,928 - -0.1 494,928 - +0.1 494,928 - -0.8 494,928 - +0.5 494,931 + +0.2 494,931 + +0.4 494,931 + -0.0 494,932 - +0.3 494,932 - -1.6 494,932 - -0.4 494,932 - +0.2 494,932 - -0.2 494,932 - -1.5 494,965 + +0.2 494,965 + +1.9 494,965 + +1.2 494,965 + -0.3 494,965 + +0.7 494,965 + -2.0 494,965 + +0.4 494,965 + -0.9 494,965 + +0.8 494,966 - -0.6 494,966 - +0.7 494,966 - -0.8 494,966 - -1.6 494,966 - +0.4 494,966 - +0.2 494,966 - +0.5 494,966 - -0.5 494,966 - -0.0 494,966 - +0.4 494,966 - +0.3 494,966 - +0.8 494,966 - +0.0 494,966 - +0.2 494,966 - -0.0 494,966 - -0.3 494,975 - +0.9 494,975 - +0.2 495,069 - +0.3 495,095 + -0.2 495,109 + -0.2 495,110 - -0.2 495,110 - -1.4 495,110 - +0.1 495,110 - -0.3 495,461 + PfGW456L13_430 0.19 -1.6 495,461 + PfGW456L13_430 0.19 -2.0 495,461 + PfGW456L13_430 0.19 +1.2 495,462 - PfGW456L13_430 0.19 -1.8 495,522 - PfGW456L13_430 0.23 -1.4 495,554 + PfGW456L13_430 0.25 -2.1 495,554 + PfGW456L13_430 0.25 -1.4 495,554 + PfGW456L13_430 0.25 -1.1 495,555 - PfGW456L13_430 0.25 +0.2 495,555 - PfGW456L13_430 0.25 -2.1 495,555 - PfGW456L13_430 0.25 -1.8 495,555 - PfGW456L13_430 0.25 -2.7 495,620 + PfGW456L13_430 0.29 -3.3 495,620 + PfGW456L13_430 0.29 -1.8 495,710 + PfGW456L13_430 0.34 -1.0 495,710 + PfGW456L13_430 0.34 -2.5 495,710 + PfGW456L13_430 0.34 -2.7 495,710 + PfGW456L13_430 0.34 +0.2 495,710 + PfGW456L13_430 0.34 -2.0 495,710 + PfGW456L13_430 0.34 -2.7 495,711 - PfGW456L13_430 0.35 -1.6 495,711 - PfGW456L13_430 0.35 -0.4 495,711 - PfGW456L13_430 0.35 -2.1 495,713 - PfGW456L13_430 0.35 -0.4 495,750 + PfGW456L13_430 0.37 -2.3 495,758 + PfGW456L13_430 0.38 -3.0 495,758 + PfGW456L13_430 0.38 -2.9 495,758 + PfGW456L13_430 0.38 -3.5 495,759 - PfGW456L13_430 0.38 -1.8 495,759 - PfGW456L13_430 0.38 -2.0 495,759 - PfGW456L13_430 0.38 -1.4 495,845 + PfGW456L13_430 0.43 +0.4 495,846 - PfGW456L13_430 0.43 -1.0 495,846 - PfGW456L13_430 0.43 -2.8 495,846 - PfGW456L13_430 0.43 -0.1 495,923 + PfGW456L13_430 0.48 -1.4 495,923 + PfGW456L13_430 0.48 -2.5 495,923 + PfGW456L13_430 0.48 -2.1 495,923 + PfGW456L13_430 0.48 -1.1 495,941 + PfGW456L13_430 0.49 -3.0 495,942 - PfGW456L13_430 0.49 -0.8 495,942 - PfGW456L13_430 0.49 -1.4 495,987 - PfGW456L13_430 0.52 -2.0 496,061 + PfGW456L13_430 0.57 -2.4 496,061 + PfGW456L13_430 0.57 -2.0 496,062 - PfGW456L13_430 0.57 -1.8 496,094 + PfGW456L13_430 0.59 -0.8 496,095 - PfGW456L13_430 0.59 -0.8 496,095 - PfGW456L13_430 0.59 +1.2 496,095 - PfGW456L13_430 0.59 -1.6 496,095 - PfGW456L13_430 0.59 -2.6 496,095 - PfGW456L13_430 0.59 -2.3 496,143 - PfGW456L13_430 0.62 -2.1 496,153 - PfGW456L13_430 0.62 -2.0 496,153 - PfGW456L13_430 0.62 -2.3 496,153 - PfGW456L13_430 0.62 -2.6 496,715 + -0.5 496,741 + +0.4 496,741 + +0.4 496,742 - +0.2 496,742 - +0.1 496,742 - +1.5 496,745 + -0.7 496,745 + +0.3 496,745 + -0.5 496,745 + +0.5 496,746 - +0.1 496,770 + -0.6 496,833 + +1.2 496,833 + -0.5 496,872 - +0.7 497,015 - -0.5 497,015 - -1.9 497,015 - +0.4 497,015 - +0.2 497,133 + PfGW456L13_431 0.14 -0.1 497,157 - PfGW456L13_431 0.17 +0.2 497,189 + PfGW456L13_431 0.20 +0.5 497,394 - PfGW456L13_431 0.41 +0.3 497,394 - PfGW456L13_431 0.41 -1.1 497,394 - PfGW456L13_431 0.41 -0.5 497,395 + PfGW456L13_431 0.41 +0.2 497,409 + PfGW456L13_431 0.42 -0.9 497,409 + PfGW456L13_431 0.42 -0.4 497,409 + PfGW456L13_431 0.42 +0.4 497,409 + PfGW456L13_431 0.42 +0.4 497,410 - PfGW456L13_431 0.42 -0.9 497,526 + PfGW456L13_431 0.54 +0.4 497,527 - PfGW456L13_431 0.54 -0.7 497,527 - PfGW456L13_431 0.54 -1.1 497,527 - PfGW456L13_431 0.54 +1.6 497,700 + PfGW456L13_431 0.72 -0.1
Or see this region's nucleotide sequence