Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3825

Experiment: Cephalothin 3 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3824 and PfGW456L13_3825 overlap by 2 nucleotidesPfGW456L13_3825 and PfGW456L13_3826 are separated by 232 nucleotides PfGW456L13_3824 - Muconate cycloisomerase (EC 5.5.1.1), at 4,290,650 to 4,291,924 _3824 PfGW456L13_3825 - Aromatic hydrocarbon utilization transcriptional regulator CatR (LysR family), at 4,291,923 to 4,292,810 _3825 PfGW456L13_3826 - Uricase (urate oxidase) (EC 1.7.3.3), at 4,293,043 to 4,293,942 _3826 Position (kb) 4291 4292 4293Strain fitness (log2 ratio) -2 -1 0 1 2at 4290.950 kb on + strand, within PfGW456L13_3824at 4290.951 kb on - strand, within PfGW456L13_3824at 4290.951 kb on - strand, within PfGW456L13_3824at 4291.867 kb on + strandat 4291.944 kb on + strandat 4291.944 kb on + strandat 4291.945 kb on - strandat 4291.955 kb on - strandat 4292.226 kb on + strand, within PfGW456L13_3825at 4292.226 kb on + strand, within PfGW456L13_3825at 4292.227 kb on - strand, within PfGW456L13_3825at 4292.500 kb on - strand, within PfGW456L13_3825at 4292.523 kb on + strand, within PfGW456L13_3825at 4292.749 kb on + strandat 4292.749 kb on + strandat 4292.749 kb on + strandat 4292.749 kb on + strandat 4292.749 kb on + strandat 4292.749 kb on + strandat 4292.750 kb on - strandat 4292.750 kb on - strandat 4292.750 kb on - strandat 4292.750 kb on - strandat 4292.816 kb on + strandat 4292.817 kb on - strandat 4292.817 kb on - strandat 4293.044 kb on + strandat 4293.044 kb on + strandat 4293.221 kb on + strandat 4293.244 kb on - strand, within PfGW456L13_3826at 4293.246 kb on - strand, within PfGW456L13_3826at 4293.424 kb on + strand, within PfGW456L13_3826at 4293.424 kb on + strand, within PfGW456L13_3826at 4293.424 kb on + strand, within PfGW456L13_3826at 4293.424 kb on + strand, within PfGW456L13_3826at 4293.424 kb on + strand, within PfGW456L13_3826at 4293.424 kb on + strand, within PfGW456L13_3826at 4293.424 kb on + strand, within PfGW456L13_3826at 4293.424 kb on + strand, within PfGW456L13_3826at 4293.424 kb on + strand, within PfGW456L13_3826at 4293.424 kb on + strand, within PfGW456L13_3826at 4293.424 kb on + strand, within PfGW456L13_3826at 4293.425 kb on - strand, within PfGW456L13_3826at 4293.425 kb on - strand, within PfGW456L13_3826at 4293.425 kb on - strand, within PfGW456L13_3826at 4293.425 kb on - strand, within PfGW456L13_3826at 4293.425 kb on - strand, within PfGW456L13_3826at 4293.425 kb on - strand, within PfGW456L13_3826at 4293.425 kb on - strand, within PfGW456L13_3826at 4293.425 kb on - strand, within PfGW456L13_3826at 4293.425 kb on - strand, within PfGW456L13_3826at 4293.425 kb on - strand, within PfGW456L13_3826at 4293.425 kb on - strand, within PfGW456L13_3826at 4293.425 kb on - strand, within PfGW456L13_3826at 4293.425 kb on - strand, within PfGW456L13_3826at 4293.425 kb on - strand, within PfGW456L13_3826at 4293.470 kb on + strand, within PfGW456L13_3826at 4293.470 kb on + strand, within PfGW456L13_3826at 4293.471 kb on - strand, within PfGW456L13_3826at 4293.621 kb on + strand, within PfGW456L13_3826at 4293.621 kb on + strand, within PfGW456L13_3826at 4293.621 kb on + strand, within PfGW456L13_3826at 4293.621 kb on + strand, within PfGW456L13_3826at 4293.622 kb on - strand, within PfGW456L13_3826at 4293.754 kb on + strand, within PfGW456L13_3826at 4293.755 kb on - strand, within PfGW456L13_3826at 4293.755 kb on - strand, within PfGW456L13_3826at 4293.755 kb on - strand, within PfGW456L13_3826at 4293.755 kb on - strand, within PfGW456L13_3826at 4293.755 kb on - strand, within PfGW456L13_3826at 4293.755 kb on - strand, within PfGW456L13_3826

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 3 mg/ml
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4,290,950 + PfGW456L13_3824 0.24 -0.5
4,290,951 - PfGW456L13_3824 0.24 -1.4
4,290,951 - PfGW456L13_3824 0.24 -1.4
4,291,867 + -1.9
4,291,944 + -0.4
4,291,944 + -0.9
4,291,945 - +0.2
4,291,955 - +0.5
4,292,226 + PfGW456L13_3825 0.34 -1.3
4,292,226 + PfGW456L13_3825 0.34 -0.4
4,292,227 - PfGW456L13_3825 0.34 -1.2
4,292,500 - PfGW456L13_3825 0.65 -0.9
4,292,523 + PfGW456L13_3825 0.68 +0.0
4,292,749 + +1.3
4,292,749 + -2.5
4,292,749 + -0.2
4,292,749 + +0.6
4,292,749 + -0.7
4,292,749 + +0.5
4,292,750 - +0.9
4,292,750 - +1.0
4,292,750 - +0.2
4,292,750 - +0.6
4,292,816 + +0.0
4,292,817 - +0.7
4,292,817 - +0.2
4,293,044 + +0.3
4,293,044 + -1.0
4,293,221 + -2.1
4,293,244 - PfGW456L13_3826 0.22 -0.5
4,293,246 - PfGW456L13_3826 0.23 -0.0
4,293,424 + PfGW456L13_3826 0.42 -1.1
4,293,424 + PfGW456L13_3826 0.42 -0.7
4,293,424 + PfGW456L13_3826 0.42 +0.4
4,293,424 + PfGW456L13_3826 0.42 +0.3
4,293,424 + PfGW456L13_3826 0.42 -0.1
4,293,424 + PfGW456L13_3826 0.42 -0.1
4,293,424 + PfGW456L13_3826 0.42 +0.7
4,293,424 + PfGW456L13_3826 0.42 +0.4
4,293,424 + PfGW456L13_3826 0.42 -1.6
4,293,424 + PfGW456L13_3826 0.42 -0.4
4,293,424 + PfGW456L13_3826 0.42 -0.1
4,293,425 - PfGW456L13_3826 0.42 -0.3
4,293,425 - PfGW456L13_3826 0.42 -1.2
4,293,425 - PfGW456L13_3826 0.42 -0.3
4,293,425 - PfGW456L13_3826 0.42 -0.2
4,293,425 - PfGW456L13_3826 0.42 +0.5
4,293,425 - PfGW456L13_3826 0.42 +1.7
4,293,425 - PfGW456L13_3826 0.42 +0.8
4,293,425 - PfGW456L13_3826 0.42 +2.0
4,293,425 - PfGW456L13_3826 0.42 -0.1
4,293,425 - PfGW456L13_3826 0.42 -1.6
4,293,425 - PfGW456L13_3826 0.42 +0.7
4,293,425 - PfGW456L13_3826 0.42 +0.2
4,293,425 - PfGW456L13_3826 0.42 +0.8
4,293,425 - PfGW456L13_3826 0.42 +0.9
4,293,470 + PfGW456L13_3826 0.47 +1.6
4,293,470 + PfGW456L13_3826 0.47 +0.3
4,293,471 - PfGW456L13_3826 0.48 -0.5
4,293,621 + PfGW456L13_3826 0.64 +0.4
4,293,621 + PfGW456L13_3826 0.64 +0.4
4,293,621 + PfGW456L13_3826 0.64 -0.4
4,293,621 + PfGW456L13_3826 0.64 -1.1
4,293,622 - PfGW456L13_3826 0.64 +0.6
4,293,754 + PfGW456L13_3826 0.79 +0.0
4,293,755 - PfGW456L13_3826 0.79 -1.0
4,293,755 - PfGW456L13_3826 0.79 -1.2
4,293,755 - PfGW456L13_3826 0.79 +0.8
4,293,755 - PfGW456L13_3826 0.79 -1.5
4,293,755 - PfGW456L13_3826 0.79 -0.3
4,293,755 - PfGW456L13_3826 0.79 -0.7

Or see this region's nucleotide sequence