Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3699

Experiment: Cephalothin 3 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3698 and PfGW456L13_3699 are separated by 562 nucleotidesPfGW456L13_3699 and PfGW456L13_3700 are separated by 91 nucleotidesPfGW456L13_3700 and PfGW456L13_3701 are separated by 12 nucleotides PfGW456L13_3698 - hypothetical protein, at 4,161,180 to 4,161,341 _3698 PfGW456L13_3699 - Arginine/ornithine ABC transporter, periplasmic arginine/ornithine binding protein, at 4,161,904 to 4,162,680 _3699 PfGW456L13_3700 - Arginine/ornithine ABC transporter, permease protein AotQ, at 4,162,772 to 4,163,461 _3700 PfGW456L13_3701 - Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1), at 4,163,474 to 4,164,172 _3701 Position (kb) 4161 4162 4163Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4161.181 kb on + strandat 4161.362 kb on + strandat 4161.362 kb on + strandat 4161.362 kb on + strandat 4161.362 kb on + strandat 4161.378 kb on + strandat 4161.379 kb on - strandat 4161.379 kb on - strandat 4161.386 kb on + strandat 4161.386 kb on + strandat 4161.386 kb on + strandat 4161.387 kb on - strandat 4161.587 kb on + strandat 4161.588 kb on - strandat 4161.588 kb on - strandat 4161.661 kb on + strandat 4161.661 kb on + strandat 4161.670 kb on + strandat 4161.703 kb on + strandat 4161.703 kb on + strandat 4161.703 kb on + strandat 4161.703 kb on + strandat 4161.703 kb on + strandat 4161.704 kb on - strandat 4161.704 kb on - strandat 4161.728 kb on + strandat 4161.729 kb on - strandat 4161.729 kb on - strandat 4161.729 kb on - strandat 4161.729 kb on - strandat 4161.903 kb on + strandat 4161.904 kb on - strandat 4161.904 kb on - strandat 4161.904 kb on - strandat 4161.904 kb on - strandat 4161.904 kb on - strandat 4161.904 kb on - strandat 4161.904 kb on - strandat 4161.904 kb on - strandat 4161.923 kb on + strandat 4161.923 kb on + strandat 4161.924 kb on - strandat 4161.924 kb on - strandat 4161.924 kb on - strandat 4161.924 kb on - strandat 4162.004 kb on - strand, within PfGW456L13_3699at 4162.054 kb on + strand, within PfGW456L13_3699at 4162.222 kb on + strand, within PfGW456L13_3699at 4162.222 kb on + strand, within PfGW456L13_3699at 4162.225 kb on + strand, within PfGW456L13_3699at 4162.225 kb on + strand, within PfGW456L13_3699at 4162.226 kb on - strand, within PfGW456L13_3699at 4162.226 kb on - strand, within PfGW456L13_3699at 4162.327 kb on + strand, within PfGW456L13_3699at 4162.327 kb on + strand, within PfGW456L13_3699at 4162.381 kb on + strand, within PfGW456L13_3699at 4162.381 kb on + strand, within PfGW456L13_3699at 4162.630 kb on + strandat 4162.630 kb on + strandat 4162.652 kb on - strandat 4162.669 kb on + strandat 4162.670 kb on - strandat 4162.670 kb on - strandat 4162.670 kb on - strandat 4162.670 kb on - strandat 4162.678 kb on + strandat 4162.678 kb on + strandat 4162.691 kb on + strandat 4162.709 kb on - strandat 4162.709 kb on - strandat 4162.822 kb on - strandat 4162.925 kb on + strand, within PfGW456L13_3700at 4162.925 kb on + strand, within PfGW456L13_3700at 4162.925 kb on + strand, within PfGW456L13_3700at 4162.925 kb on + strand, within PfGW456L13_3700at 4162.926 kb on - strand, within PfGW456L13_3700at 4163.024 kb on + strand, within PfGW456L13_3700at 4163.025 kb on - strand, within PfGW456L13_3700at 4163.034 kb on - strand, within PfGW456L13_3700at 4163.034 kb on - strand, within PfGW456L13_3700at 4163.036 kb on - strand, within PfGW456L13_3700at 4163.093 kb on + strand, within PfGW456L13_3700at 4163.094 kb on - strand, within PfGW456L13_3700at 4163.162 kb on + strand, within PfGW456L13_3700at 4163.162 kb on + strand, within PfGW456L13_3700at 4163.163 kb on - strand, within PfGW456L13_3700at 4163.163 kb on - strand, within PfGW456L13_3700at 4163.254 kb on - strand, within PfGW456L13_3700at 4163.375 kb on + strand, within PfGW456L13_3700at 4163.430 kb on - strandat 4163.430 kb on - strandat 4163.486 kb on + strandat 4163.487 kb on - strandat 4163.487 kb on - strandat 4163.487 kb on - strandat 4163.517 kb on - strandat 4163.554 kb on + strand, within PfGW456L13_3701at 4163.554 kb on + strand, within PfGW456L13_3701at 4163.554 kb on + strand, within PfGW456L13_3701at 4163.554 kb on + strand, within PfGW456L13_3701at 4163.555 kb on - strand, within PfGW456L13_3701at 4163.555 kb on - strand, within PfGW456L13_3701at 4163.645 kb on + strand, within PfGW456L13_3701at 4163.645 kb on + strand, within PfGW456L13_3701at 4163.646 kb on - strand, within PfGW456L13_3701at 4163.646 kb on - strand, within PfGW456L13_3701at 4163.646 kb on - strand, within PfGW456L13_3701at 4163.646 kb on - strand, within PfGW456L13_3701at 4163.647 kb on + strand, within PfGW456L13_3701at 4163.647 kb on + strand, within PfGW456L13_3701at 4163.647 kb on + strand, within PfGW456L13_3701at 4163.648 kb on - strand, within PfGW456L13_3701at 4163.648 kb on - strand, within PfGW456L13_3701at 4163.648 kb on - strand, within PfGW456L13_3701at 4163.648 kb on - strand, within PfGW456L13_3701at 4163.648 kb on - strand, within PfGW456L13_3701at 4163.648 kb on - strand, within PfGW456L13_3701at 4163.651 kb on + strand, within PfGW456L13_3701at 4163.651 kb on + strand, within PfGW456L13_3701at 4163.651 kb on + strand, within PfGW456L13_3701at 4163.652 kb on - strand, within PfGW456L13_3701at 4163.652 kb on - strand, within PfGW456L13_3701at 4163.652 kb on - strand, within PfGW456L13_3701at 4163.652 kb on - strand, within PfGW456L13_3701at 4163.652 kb on - strand, within PfGW456L13_3701at 4163.652 kb on - strand, within PfGW456L13_3701at 4163.652 kb on - strand, within PfGW456L13_3701at 4163.652 kb on - strand, within PfGW456L13_3701at 4163.652 kb on - strand, within PfGW456L13_3701at 4163.652 kb on - strand, within PfGW456L13_3701

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 3 mg/ml
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4,161,181 + +0.3
4,161,362 + +0.0
4,161,362 + +0.0
4,161,362 + +0.6
4,161,362 + +1.8
4,161,378 + -1.0
4,161,379 - +0.2
4,161,379 - -0.5
4,161,386 + -1.4
4,161,386 + -1.1
4,161,386 + +0.8
4,161,387 - -0.4
4,161,587 + -1.8
4,161,588 - +0.0
4,161,588 - -0.0
4,161,661 + -1.5
4,161,661 + -0.4
4,161,670 + -2.5
4,161,703 + -0.0
4,161,703 + -2.7
4,161,703 + -0.4
4,161,703 + -1.7
4,161,703 + +0.9
4,161,704 - -0.5
4,161,704 - +0.7
4,161,728 + -3.4
4,161,729 - -0.5
4,161,729 - -0.3
4,161,729 - +0.8
4,161,729 - +0.2
4,161,903 + +0.9
4,161,904 - +1.1
4,161,904 - +0.9
4,161,904 - +0.2
4,161,904 - -0.5
4,161,904 - +0.7
4,161,904 - +0.4
4,161,904 - -1.6
4,161,904 - +0.2
4,161,923 + +0.1
4,161,923 + -0.4
4,161,924 - +1.2
4,161,924 - +0.6
4,161,924 - -0.7
4,161,924 - -0.6
4,162,004 - PfGW456L13_3699 0.13 -0.7
4,162,054 + PfGW456L13_3699 0.19 -0.7
4,162,222 + PfGW456L13_3699 0.41 -1.1
4,162,222 + PfGW456L13_3699 0.41 -0.7
4,162,225 + PfGW456L13_3699 0.41 -0.8
4,162,225 + PfGW456L13_3699 0.41 +0.0
4,162,226 - PfGW456L13_3699 0.41 -2.1
4,162,226 - PfGW456L13_3699 0.41 +0.0
4,162,327 + PfGW456L13_3699 0.54 -1.3
4,162,327 + PfGW456L13_3699 0.54 +0.4
4,162,381 + PfGW456L13_3699 0.61 -0.3
4,162,381 + PfGW456L13_3699 0.61 +0.0
4,162,630 + -0.6
4,162,630 + +0.3
4,162,652 - -0.4
4,162,669 + -0.2
4,162,670 - +0.6
4,162,670 - -1.4
4,162,670 - +0.7
4,162,670 - -1.1
4,162,678 + -0.1
4,162,678 + +0.3
4,162,691 + -1.1
4,162,709 - +1.9
4,162,709 - +0.4
4,162,822 - -0.7
4,162,925 + PfGW456L13_3700 0.22 -1.2
4,162,925 + PfGW456L13_3700 0.22 +0.8
4,162,925 + PfGW456L13_3700 0.22 +0.0
4,162,925 + PfGW456L13_3700 0.22 +0.2
4,162,926 - PfGW456L13_3700 0.22 +0.5
4,163,024 + PfGW456L13_3700 0.37 -0.2
4,163,025 - PfGW456L13_3700 0.37 +0.8
4,163,034 - PfGW456L13_3700 0.38 -0.7
4,163,034 - PfGW456L13_3700 0.38 -2.4
4,163,036 - PfGW456L13_3700 0.38 -0.6
4,163,093 + PfGW456L13_3700 0.47 +1.4
4,163,094 - PfGW456L13_3700 0.47 -0.6
4,163,162 + PfGW456L13_3700 0.57 -0.8
4,163,162 + PfGW456L13_3700 0.57 +0.2
4,163,163 - PfGW456L13_3700 0.57 -1.5
4,163,163 - PfGW456L13_3700 0.57 +0.8
4,163,254 - PfGW456L13_3700 0.70 -1.4
4,163,375 + PfGW456L13_3700 0.87 -0.0
4,163,430 - +0.0
4,163,430 - +0.8
4,163,486 + +1.2
4,163,487 - +0.7
4,163,487 - -0.2
4,163,487 - -0.9
4,163,517 - -1.4
4,163,554 + PfGW456L13_3701 0.11 -0.9
4,163,554 + PfGW456L13_3701 0.11 +1.1
4,163,554 + PfGW456L13_3701 0.11 +0.9
4,163,554 + PfGW456L13_3701 0.11 +0.2
4,163,555 - PfGW456L13_3701 0.12 -0.1
4,163,555 - PfGW456L13_3701 0.12 -0.1
4,163,645 + PfGW456L13_3701 0.24 +3.2
4,163,645 + PfGW456L13_3701 0.24 +0.3
4,163,646 - PfGW456L13_3701 0.25 +0.6
4,163,646 - PfGW456L13_3701 0.25 +1.6
4,163,646 - PfGW456L13_3701 0.25 +1.2
4,163,646 - PfGW456L13_3701 0.25 +0.6
4,163,647 + PfGW456L13_3701 0.25 +1.0
4,163,647 + PfGW456L13_3701 0.25 -2.3
4,163,647 + PfGW456L13_3701 0.25 +0.4
4,163,648 - PfGW456L13_3701 0.25 +0.6
4,163,648 - PfGW456L13_3701 0.25 -0.4
4,163,648 - PfGW456L13_3701 0.25 -1.2
4,163,648 - PfGW456L13_3701 0.25 +0.4
4,163,648 - PfGW456L13_3701 0.25 +0.3
4,163,648 - PfGW456L13_3701 0.25 +0.2
4,163,651 + PfGW456L13_3701 0.25 -1.4
4,163,651 + PfGW456L13_3701 0.25 +0.5
4,163,651 + PfGW456L13_3701 0.25 +0.1
4,163,652 - PfGW456L13_3701 0.25 -0.9
4,163,652 - PfGW456L13_3701 0.25 +0.1
4,163,652 - PfGW456L13_3701 0.25 -0.9
4,163,652 - PfGW456L13_3701 0.25 +1.0
4,163,652 - PfGW456L13_3701 0.25 -1.9
4,163,652 - PfGW456L13_3701 0.25 -1.9
4,163,652 - PfGW456L13_3701 0.25 -0.4
4,163,652 - PfGW456L13_3701 0.25 -1.2
4,163,652 - PfGW456L13_3701 0.25 +0.4
4,163,652 - PfGW456L13_3701 0.25 -0.9

Or see this region's nucleotide sequence