Experiment: Cephalothin 3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_301 and PfGW456L13_302 are separated by 81 nucleotides PfGW456L13_302 and PfGW456L13_303 overlap by 8 nucleotides PfGW456L13_303 and PfGW456L13_304 are separated by 25 nucleotides PfGW456L13_304 and PfGW456L13_305 are separated by 10 nucleotides
PfGW456L13_301 - Ubiquinone biosynthesis monooxygenase UbiB, at 351,788 to 353,392
_301
PfGW456L13_302 - Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19), at 353,474 to 353,875
_302
PfGW456L13_303 - phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) <small>(from data)</small>, at 353,868 to 354,200
_303
PfGW456L13_304 - Twin-arginine translocation protein TatA, at 354,226 to 354,498
_304
PfGW456L13_305 - Twin-arginine translocation protein TatB, at 354,509 to 354,952
_305
Position (kb) 353
354 Strain fitness (log2 ratio) -2
-1
0
1 at 353.621 kb on + strand, within PfGW456L13_302 at 353.621 kb on + strand, within PfGW456L13_302 at 353.622 kb on - strand, within PfGW456L13_302 at 353.622 kb on - strand, within PfGW456L13_302 at 353.622 kb on - strand, within PfGW456L13_302 at 353.622 kb on - strand, within PfGW456L13_302 at 353.622 kb on - strand, within PfGW456L13_302 at 353.622 kb on - strand, within PfGW456L13_302 at 353.783 kb on + strand, within PfGW456L13_302 at 353.792 kb on + strand, within PfGW456L13_302 at 353.793 kb on - strand, within PfGW456L13_302 at 353.793 kb on - strand, within PfGW456L13_302 at 353.849 kb on + strand at 353.849 kb on + strand at 353.849 kb on + strand at 353.849 kb on + strand at 353.850 kb on - strand at 353.937 kb on + strand, within PfGW456L13_303 at 353.952 kb on + strand, within PfGW456L13_303 at 353.952 kb on + strand, within PfGW456L13_303 at 354.130 kb on + strand, within PfGW456L13_303 at 354.202 kb on + strand at 354.202 kb on + strand at 354.202 kb on + strand at 354.206 kb on + strand at 354.206 kb on + strand at 354.206 kb on + strand at 354.206 kb on + strand at 354.206 kb on + strand at 354.206 kb on + strand at 354.206 kb on + strand at 354.209 kb on + strand at 354.209 kb on + strand at 354.507 kb on + strand at 354.507 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 3 mg/ml remove 353,621 + PfGW456L13_302 0.37 -1.3 353,621 + PfGW456L13_302 0.37 -0.7 353,622 - PfGW456L13_302 0.37 -0.3 353,622 - PfGW456L13_302 0.37 -1.5 353,622 - PfGW456L13_302 0.37 -0.0 353,622 - PfGW456L13_302 0.37 -1.7 353,622 - PfGW456L13_302 0.37 -0.1 353,622 - PfGW456L13_302 0.37 -0.4 353,783 + PfGW456L13_302 0.77 -0.5 353,792 + PfGW456L13_302 0.79 -1.4 353,793 - PfGW456L13_302 0.79 +0.2 353,793 - PfGW456L13_302 0.79 -2.4 353,849 + -0.3 353,849 + +0.4 353,849 + +0.7 353,849 + -1.5 353,850 - -2.0 353,937 + PfGW456L13_303 0.21 -0.4 353,952 + PfGW456L13_303 0.25 +0.3 353,952 + PfGW456L13_303 0.25 -1.0 354,130 + PfGW456L13_303 0.79 +0.8 354,202 + -1.9 354,202 + -0.6 354,202 + +0.0 354,206 + -0.0 354,206 + -0.8 354,206 + -0.4 354,206 + -0.4 354,206 + -0.4 354,206 + -0.0 354,206 + +1.0 354,209 + -0.2 354,209 + -0.4 354,507 + -1.7 354,507 + -0.3
Or see this region's nucleotide sequence