Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3017

Experiment: Cephalothin 3 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3016 and PfGW456L13_3017 are separated by 134 nucleotidesPfGW456L13_3017 and PfGW456L13_3018 are separated by 11 nucleotidesPfGW456L13_3018 and PfGW456L13_3019 overlap by 4 nucleotides PfGW456L13_3016 - Undecaprenyl-diphosphatase (EC 3.6.1.27), at 3,357,045 to 3,357,875 _3016 PfGW456L13_3017 - Cold-shock DNA-binding domain, at 3,358,010 to 3,358,300 _3017 PfGW456L13_3018 - FIG00955061: hypothetical protein, at 3,358,312 to 3,358,671 _3018 PfGW456L13_3019 - Transcriptional regulator, LysR family, at 3,358,668 to 3,359,576 _3019 Position (kb) 3358 3359Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3357.076 kb on + strandat 3357.076 kb on + strandat 3357.076 kb on + strandat 3357.076 kb on + strandat 3357.076 kb on + strandat 3357.076 kb on + strandat 3357.077 kb on - strandat 3357.077 kb on - strandat 3357.077 kb on - strandat 3357.077 kb on - strandat 3357.088 kb on + strandat 3357.088 kb on + strandat 3357.088 kb on + strandat 3357.088 kb on + strandat 3357.088 kb on + strandat 3357.088 kb on + strandat 3357.088 kb on + strandat 3357.224 kb on - strand, within PfGW456L13_3016at 3357.366 kb on + strand, within PfGW456L13_3016at 3357.367 kb on - strand, within PfGW456L13_3016at 3357.367 kb on - strand, within PfGW456L13_3016at 3357.649 kb on - strand, within PfGW456L13_3016at 3357.649 kb on - strand, within PfGW456L13_3016at 3357.663 kb on + strand, within PfGW456L13_3016at 3357.663 kb on + strand, within PfGW456L13_3016at 3357.663 kb on + strand, within PfGW456L13_3016at 3357.664 kb on - strand, within PfGW456L13_3016at 3357.664 kb on - strand, within PfGW456L13_3016at 3357.664 kb on - strand, within PfGW456L13_3016at 3357.780 kb on + strand, within PfGW456L13_3016at 3357.780 kb on + strand, within PfGW456L13_3016at 3357.780 kb on + strand, within PfGW456L13_3016at 3357.780 kb on + strand, within PfGW456L13_3016at 3357.781 kb on - strand, within PfGW456L13_3016at 3357.781 kb on - strand, within PfGW456L13_3016at 3357.781 kb on - strand, within PfGW456L13_3016at 3357.781 kb on - strand, within PfGW456L13_3016at 3358.067 kb on + strand, within PfGW456L13_3017at 3358.067 kb on + strand, within PfGW456L13_3017at 3358.109 kb on - strand, within PfGW456L13_3017at 3358.313 kb on + strandat 3358.451 kb on + strand, within PfGW456L13_3018at 3358.596 kb on + strand, within PfGW456L13_3018at 3358.596 kb on + strand, within PfGW456L13_3018at 3358.596 kb on + strand, within PfGW456L13_3018at 3358.596 kb on + strand, within PfGW456L13_3018at 3358.596 kb on + strandat 3358.596 kb on + strand, within PfGW456L13_3018at 3358.596 kb on + strand, within PfGW456L13_3018at 3358.596 kb on + strand, within PfGW456L13_3018at 3358.596 kb on + strand, within PfGW456L13_3018at 3358.597 kb on - strand, within PfGW456L13_3018at 3358.597 kb on - strand, within PfGW456L13_3018at 3358.597 kb on - strand, within PfGW456L13_3018at 3358.597 kb on - strand, within PfGW456L13_3018at 3358.597 kb on - strand, within PfGW456L13_3018at 3358.598 kb on + strand, within PfGW456L13_3018at 3358.599 kb on - strand, within PfGW456L13_3018at 3358.599 kb on - strand, within PfGW456L13_3018at 3358.623 kb on + strand, within PfGW456L13_3018at 3358.624 kb on - strand, within PfGW456L13_3018at 3358.671 kb on + strandat 3358.759 kb on + strand, within PfGW456L13_3019at 3358.760 kb on - strand, within PfGW456L13_3019at 3358.843 kb on + strand, within PfGW456L13_3019at 3358.843 kb on + strandat 3358.843 kb on + strand, within PfGW456L13_3019at 3358.843 kb on + strand, within PfGW456L13_3019at 3358.843 kb on + strand, within PfGW456L13_3019at 3358.844 kb on - strand, within PfGW456L13_3019at 3358.844 kb on - strand, within PfGW456L13_3019at 3358.844 kb on - strand, within PfGW456L13_3019at 3358.844 kb on - strand, within PfGW456L13_3019at 3358.844 kb on - strand, within PfGW456L13_3019at 3358.844 kb on - strand, within PfGW456L13_3019at 3358.844 kb on - strand, within PfGW456L13_3019at 3358.844 kb on - strand, within PfGW456L13_3019at 3358.844 kb on - strand, within PfGW456L13_3019at 3358.844 kb on - strand, within PfGW456L13_3019at 3358.844 kb on - strand, within PfGW456L13_3019at 3358.862 kb on + strand, within PfGW456L13_3019at 3358.863 kb on - strand, within PfGW456L13_3019at 3358.901 kb on + strand, within PfGW456L13_3019at 3359.259 kb on + strand, within PfGW456L13_3019

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 3 mg/ml
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3,357,076 + +0.6
3,357,076 + -0.7
3,357,076 + +2.2
3,357,076 + +0.6
3,357,076 + -0.2
3,357,076 + -0.2
3,357,077 - -0.5
3,357,077 - -1.3
3,357,077 - -0.9
3,357,077 - -0.2
3,357,088 + +0.9
3,357,088 + -0.6
3,357,088 + -0.3
3,357,088 + +1.2
3,357,088 + -0.0
3,357,088 + +2.0
3,357,088 + -0.1
3,357,224 - PfGW456L13_3016 0.22 +0.8
3,357,366 + PfGW456L13_3016 0.39 -0.6
3,357,367 - PfGW456L13_3016 0.39 +0.2
3,357,367 - PfGW456L13_3016 0.39 -0.7
3,357,649 - PfGW456L13_3016 0.73 +1.0
3,357,649 - PfGW456L13_3016 0.73 +0.5
3,357,663 + PfGW456L13_3016 0.74 -0.8
3,357,663 + PfGW456L13_3016 0.74 +0.2
3,357,663 + PfGW456L13_3016 0.74 +0.3
3,357,664 - PfGW456L13_3016 0.74 +0.6
3,357,664 - PfGW456L13_3016 0.74 +1.6
3,357,664 - PfGW456L13_3016 0.74 -0.4
3,357,780 + PfGW456L13_3016 0.88 -0.7
3,357,780 + PfGW456L13_3016 0.88 -0.4
3,357,780 + PfGW456L13_3016 0.88 +1.0
3,357,780 + PfGW456L13_3016 0.88 +0.1
3,357,781 - PfGW456L13_3016 0.89 +0.5
3,357,781 - PfGW456L13_3016 0.89 +0.3
3,357,781 - PfGW456L13_3016 0.89 -1.4
3,357,781 - PfGW456L13_3016 0.89 -0.5
3,358,067 + PfGW456L13_3017 0.20 -2.7
3,358,067 + PfGW456L13_3017 0.20 +0.6
3,358,109 - PfGW456L13_3017 0.34 -1.7
3,358,313 + +2.9
3,358,451 + PfGW456L13_3018 0.39 -0.2
3,358,596 + PfGW456L13_3018 0.79 +0.8
3,358,596 + PfGW456L13_3018 0.79 -1.1
3,358,596 + PfGW456L13_3018 0.79 -0.7
3,358,596 + PfGW456L13_3018 0.79 -1.2
3,358,596 + +1.6
3,358,596 + PfGW456L13_3018 0.79 +0.1
3,358,596 + PfGW456L13_3018 0.79 +0.1
3,358,596 + PfGW456L13_3018 0.79 -0.1
3,358,596 + PfGW456L13_3018 0.79 -1.0
3,358,597 - PfGW456L13_3018 0.79 +0.3
3,358,597 - PfGW456L13_3018 0.79 -0.0
3,358,597 - PfGW456L13_3018 0.79 +1.0
3,358,597 - PfGW456L13_3018 0.79 +0.4
3,358,597 - PfGW456L13_3018 0.79 -0.4
3,358,598 + PfGW456L13_3018 0.79 -0.1
3,358,599 - PfGW456L13_3018 0.80 +0.1
3,358,599 - PfGW456L13_3018 0.80 +0.7
3,358,623 + PfGW456L13_3018 0.86 +0.0
3,358,624 - PfGW456L13_3018 0.87 -0.0
3,358,671 + +0.1
3,358,759 + PfGW456L13_3019 0.10 +0.6
3,358,760 - PfGW456L13_3019 0.10 +2.3
3,358,843 + PfGW456L13_3019 0.19 -0.2
3,358,843 + +1.6
3,358,843 + PfGW456L13_3019 0.19 +0.2
3,358,843 + PfGW456L13_3019 0.19 -1.0
3,358,843 + PfGW456L13_3019 0.19 -0.2
3,358,844 - PfGW456L13_3019 0.19 +0.0
3,358,844 - PfGW456L13_3019 0.19 -0.4
3,358,844 - PfGW456L13_3019 0.19 -2.4
3,358,844 - PfGW456L13_3019 0.19 -1.4
3,358,844 - PfGW456L13_3019 0.19 -0.3
3,358,844 - PfGW456L13_3019 0.19 +0.3
3,358,844 - PfGW456L13_3019 0.19 -1.0
3,358,844 - PfGW456L13_3019 0.19 -0.1
3,358,844 - PfGW456L13_3019 0.19 +0.4
3,358,844 - PfGW456L13_3019 0.19 +0.8
3,358,844 - PfGW456L13_3019 0.19 -1.0
3,358,862 + PfGW456L13_3019 0.21 +0.5
3,358,863 - PfGW456L13_3019 0.21 -0.2
3,358,901 + PfGW456L13_3019 0.26 +0.9
3,359,259 + PfGW456L13_3019 0.65 -0.0

Or see this region's nucleotide sequence